UFO12342.5prime Sequence
856 bp (448 high quality bases) assembled on 2012-10-16
> UFO12342.5prime
AGTCGACATGGGACGCCGCTCCATAAACACCACGAAGAGTGGAAAGTACA
TGAATCCCACGGACCAGGCGCGCAAGGAGGCCCGCAAGAAGGAGCTCAAG
AAGAACAAGAAACAGCGCCAAATGGTGCGGGCCGCCGTTTTGAAGAACAA
GGATCCTTCACAGATACTTGAGGAGATGGAGAAGATCGACGAGATGGAGT
ACAACGTTCTGCAACCATCGCCGCTGAACGAGAAGGGGCTGCGCGACAAG
CGCAAAAAGCTGAAGGAAACATTCGACCGCGTAATGCGACTCTATCACAA
TGACGAGCCGGAGCACTGGGCGGACCTCAAGCGCAAGGAGGTGGAGTATG
AAGAAAAAAGCGCCTGAAAAAGCAGCAGTACTACGAAAGCGTTTAAGCAC
GCCCCAGAGCGTCCAGATTGACGAAATTCCACTGCCCGGCTTCGGTTGTC
CTGCCGGGTCAGGGCGGTTCTACCGAAACGACTGGCGGATCGGGTGGTTT
GCGGGATTCGGCGCATCCGTTTGTCATACCCCCTTCCCCCCCCCGCCCAT
GACAATGGCACTGCCGCCTTATGCTCCAGGCGCTCCACCAGGCGTGTCCA
GAAATAGCGATTTAGCCAGCGAGGCGCAAGTGGAGAATCGAAAGAGAACG
AGCAAAAGGATTGGCTGGGTGTCCCGCCGGGACCGCCGCCAGATCTGTTT
GCCTTTTCCGAACTCAATTCCGATGCCGAGGGAATACTGACTACGATGGT
GAGGGCGAGGAGGAGGAGCCAGAGCCATTGAGACGGCAGGATAAGAGAGG
ACAGACAGCGAGCCACCGAGTCAATACCAAATATCGACGACTCATGAAGA
ATGAGC
UFO12342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2685-RA | 1952 | CG2685-RA | 220..1062 | 8..849 | 3455 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2712796..2713270 | 781..296 | 1635 | 94.3 | Minus |
| X | 23542271 | X | 2713496..2713621 | 197..72 | 630 | 100 | Minus |
| X | 23542271 | X | 2713334..2713432 | 295..197 | 480 | 99 | Minus |
| X | 23542271 | X | 2713673..2713741 | 76..8 | 330 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:10 has no hits.
UFO12342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:21 Download gff for
UFO12342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2685-RA | 211..1069 | 1..856 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:32 Download gff for
UFO12342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2685-RA | 214..1072 | 1..856 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:01 Download gff for
UFO12342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2685-RA | 214..1072 | 1..856 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:01 Download gff for
UFO12342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2712706..2713270 | 296..856 | 93 | <- | Minus |
| X | 2713334..2713431 | 198..295 | 98 | <- | Minus |
| X | 2713496..2713621 | 72..197 | 100 | <- | Minus |
| X | 2713678..2713747 | 1..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:32 Download gff for
UFO12342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2606739..2607303 | 296..856 | 93 | <- | Minus |
| arm_X | 2607367..2607464 | 198..295 | 98 | <- | Minus |
| arm_X | 2607529..2607654 | 72..197 | 100 | <- | Minus |
| arm_X | 2607711..2607780 | 1..71 | 95 | | Minus |
