Clone UFO12344 Report

Search the DGRC for UFO12344

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:123
Well:44
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG10254-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12344.5prime Sequence

602 bp (339 high quality bases) assembled on 2012-10-16

> UFO12344.5prime
AGTCGACATGATGAGCGATGTGGCGGGTGCGGCCGCTCCAGGTGGTACAC
CAGGTCAACCGCAGCAGGAGCAGGAACAGTCTTTGGCGGAGGCTGCTCCG
CGTACACCGACGCTTGCGAATCCTCCTCCATCCTCACAGGAGCTGGGTCG
GACCCCCAACCAGGAGAGCCGCCATAACGCAAATTCCCACTCCCGTCGAT
CGGGTGGTGGCCAGGTGCCATCGAAAGCCCAGGGTAACACCGAGTCCCAG
TTCTTCTTAGAGGATGGGGTTTTTCGCATTGATCGGCGGGGTCGCGTCCA
TTTTGGCTTGTAACCGCAACGACCGAGACCTATTCCTCCTCGAAGAGGAA
GATGTCGATCCGCTGTCAGGGGCGAGGTGCGTGTGCCTTCTATCCGGTGC
AAGGAGATGGTGATGACGGAACAGTCGATTGTCTGCGATCGCACCCTATG
CAGCGATGTGTGCGAGCGTCTGCAGAAAAACGTTTGCTGCAGCGGCTACG
TGCGGATGTCATGTACGCGCGATGTTATGTATGGCTCAGATGTCATAAAT
GTGCCGCGAGCGACTGCTCGATTCGATGACATTGTGCTTCCTGCATGACC
CT

UFO12344.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10254-RC 4940 CG10254-RC 277..827 6..529 2070 94.7 Plus
CG10254-RA 4997 CG10254-RA 277..827 6..529 2070 94.7 Plus
CG10254-RB 4827 CG10254-RB 107..657 6..529 2070 94.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23694023..23694450 427..6 1830 97.9 Minus
Blast to na_te.dros performed on 2014-11-28 18:13:12 has no hits.

UFO12344.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:22 Download gff for UFO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RA 201..660 1..451 96 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:34 Download gff for UFO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RB 103..562 1..451 96 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:04 Download gff for UFO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10254-RB 103..562 1..451 96 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:04 Download gff for UFO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23694023..23694453 1..427 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:34 Download gff for UFO12344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19519745..19520175 1..427 97   Minus