UFO12347.5prime Sequence
968 bp (836 high quality bases) assembled on 2012-10-16
> UFO12347.5prime
AGTCGACATGTTCAAGTTACTCGGCTTGACGCTGCTCATGGCAATGGTGG
TCCTTGGGCGACCGGAGCCACCAGTTAACTCGTATCTACCTCCGTCCGAT
AGCTATGGAGCACCGGGTCAGAGTGGTCCCGGCGGCAGGCCGTCGGATTC
CTATGGAGCTCCTGGTGGTGGAAACGGTGGACGGCCCTCAGACAGCTATG
GCGCTCCAGGCCAGGGTCAAGGACAGGGACAAGGACAAGGTGGATATGCA
GGCAAGCCCTCAGATACCTATGGAGCTCCTGGTGGTGGAAATGGCAACGG
AGGTCGTCCATCGAGCAGCTATGGCGCTCCTGGCGGTGGAAACGGTGGTC
GTCCTTCGGATACCTACGGTGCTCCTGGTGGCGGAAATGGTGGACGCCCA
TCGGACACTTATGGTGCTCCTGGTGGTGGTGGAAATGGCAACGGCGGACG
ACCTTCAAGCAGCTATGGAGCTCCTGGTCAAGGACAAGGCAACGGAAATG
GCGGTCGCTCATCGAGCAGCTATGGTGCTCCTGGCGGTGGAAACGGCGGT
CGTCCTTCGGATACCTACGGTGCTCCCGGTGGTGGAAACGGTGGTCGTCC
TTCGGATACTTACGGCGCTCCTGGTGGCGGCAATAATGGCGGTCGTCCCT
CAAGCAGCTACGGCGCTCCTGGTGGTGAAACGGTGGTCGTCCATCTGACA
CCTATGGCGCTCCTGGTGGCGGTAACGGAAACGGCAGCGGTTGTCGTTCT
TCAAGCAGCTAATGGAGCTCCTGGTCAGGCCATGTGATTTGGTGTCGTCA
TCGGACTCTATGGTGCTCCTGGTCAGAACCAAAAACCAATGATTCATATT
GGCGCCCTGGTATCGGCAATGGCAACGGCGGACGTTCTTTCCGAGTCAGC
TATTGGGAGCCTCCAGGGCTCAGGACTGGGTGCCCGAACCTCTCGGATCT
CTACCGAACCCCCCAGCT
UFO12347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
resilin-RB | 2666 | CG15920-RB | 644..1578 | 8..942 | 4125 | 96.9 | Plus |
resilin-RA | 2281 | CG15920-RA | 124..1058 | 8..942 | 4125 | 96.9 | Plus |
resilin-RB | 2666 | CG15920-RB | 904..1114 | 463..673 | 485 | 82.5 | Plus |
resilin-RB | 2666 | CG15920-RB | 1099..1309 | 268..478 | 485 | 82.5 | Plus |
resilin-RA | 2281 | CG15920-RA | 384..594 | 463..673 | 485 | 82.5 | Plus |
resilin-RA | 2281 | CG15920-RA | 579..789 | 268..478 | 485 | 82.5 | Plus |
resilin-RB | 2666 | CG15920-RB | 1196..1464 | 263..534 | 410 | 77.7 | Plus |
resilin-RA | 2281 | CG15920-RA | 676..944 | 263..534 | 410 | 77.7 | Plus |
resilin-RB | 2666 | CG15920-RB | 1241..1359 | 263..384 | 315 | 84.4 | Plus |
resilin-RA | 2281 | CG15920-RA | 721..839 | 263..384 | 315 | 84.4 | Plus |
resilin-RB | 2666 | CG15920-RB | 899..1116 | 560..777 | 300 | 77.3 | Plus |
resilin-RA | 2281 | CG15920-RA | 379..596 | 560..777 | 300 | 77.3 | Plus |
resilin-RB | 2666 | CG15920-RB | 904..1320 | 319..728 | 295 | 72.9 | Plus |
resilin-RB | 2666 | CG15920-RB | 955..1356 | 268..675 | 295 | 73 | Plus |
resilin-RA | 2281 | CG15920-RA | 384..800 | 319..728 | 295 | 72.9 | Plus |
resilin-RA | 2281 | CG15920-RA | 435..836 | 268..675 | 295 | 73 | Plus |
resilin-RB | 2666 | CG15920-RB | 899..1020 | 605..722 | 290 | 83.6 | Plus |
resilin-RA | 2281 | CG15920-RA | 379..500 | 605..722 | 290 | 83.6 | Plus |
resilin-RB | 2666 | CG15920-RB | 1156..1314 | 268..429 | 285 | 79.4 | Plus |
resilin-RA | 2281 | CG15920-RA | 636..794 | 268..429 | 285 | 79.4 | Plus |
resilin-RB | 2666 | CG15920-RB | 904..1024 | 520..634 | 280 | 82.6 | Plus |
resilin-RA | 2281 | CG15920-RA | 384..504 | 520..634 | 280 | 82.6 | Plus |
resilin-RB | 2666 | CG15920-RB | 1274..1465 | 545..717 | 260 | 77.1 | Plus |
resilin-RA | 2281 | CG15920-RA | 754..945 | 545..717 | 260 | 77.1 | Plus |
resilin-RB | 2666 | CG15920-RB | 1060..1365 | 280..591 | 240 | 73.5 | Plus |
resilin-RA | 2281 | CG15920-RA | 540..845 | 280..591 | 240 | 73.5 | Plus |
resilin-RB | 2666 | CG15920-RB | 916..1227 | 424..728 | 215 | 73.1 | Plus |
resilin-RA | 2281 | CG15920-RA | 396..707 | 424..728 | 215 | 73.1 | Plus |
resilin-RB | 2666 | CG15920-RB | 1181..1266 | 638..722 | 210 | 83.7 | Plus |
resilin-RB | 2666 | CG15920-RB | 1337..1551 | 266..474 | 210 | 75 | Plus |
resilin-RA | 2281 | CG15920-RA | 661..746 | 638..722 | 210 | 83.7 | Plus |
resilin-RA | 2281 | CG15920-RA | 817..1031 | 266..474 | 210 | 75 | Plus |
resilin-RB | 2666 | CG15920-RB | 1481..1555 | 260..334 | 195 | 84 | Plus |
resilin-RA | 2281 | CG15920-RA | 961..1035 | 260..334 | 195 | 84 | Plus |
resilin-RB | 2666 | CG15920-RB | 1294..1350 | 151..207 | 180 | 87.7 | Plus |
resilin-RA | 2281 | CG15920-RA | 774..830 | 151..207 | 180 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16780548..16781436 | 8..889 | 3855 | 97.6 | Plus |
2R | 25286936 | 2R | 16780842..16780966 | 503..627 | 430 | 89.6 | Plus |
2R | 25286936 | 2R | 16781043..16781167 | 302..426 | 430 | 89.6 | Plus |
2R | 25286936 | 2R | 16781198..16781326 | 364..489 | 325 | 85.3 | Plus |
2R | 25286936 | 2R | 16781145..16781263 | 263..384 | 290 | 84.4 | Plus |
2R | 25286936 | 2R | 16780832..16780928 | 538..634 | 275 | 85.6 | Plus |
2R | 25286936 | 2R | 16781078..16781174 | 292..388 | 275 | 85.6 | Plus |
2R | 25286936 | 2R | 16780803..16780924 | 605..722 | 240 | 83.6 | Plus |
2R | 25286936 | 2R | 16781175..16781269 | 497..591 | 235 | 83.2 | Plus |
2R | 25286936 | 2R | 16781178..16781263 | 545..630 | 235 | 84.9 | Plus |
2R | 25286936 | 2R | 16781034..16781224 | 539..728 | 225 | 76.8 | Plus |
2R | 25286936 | 2R | 16781079..16781260 | 494..675 | 225 | 77.3 | Plus |
2R | 25286936 | 2R | 16781385..16781459 | 260..334 | 195 | 84 | Plus |
2R | 25286936 | 2R | 16780904..16781020 | 658..777 | 185 | 82.6 | Plus |
2R | 25286936 | 2R | 16781037..16781131 | 635..728 | 185 | 82.1 | Plus |
2R | 25286936 | 2R | 16781085..16781170 | 638..722 | 185 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:12:55 has no hits.
UFO12347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:17 Download gff for
UFO12347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
resilin-RB | 636..1545 | 1..906 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:22 Download gff for
UFO12347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
resilin-RA | 116..1025 | 1..906 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:52 Download gff for
UFO12347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
resilin-RA | 116..1025 | 1..906 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:52 Download gff for
UFO12347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16780540..16781449 | 1..906 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:22 Download gff for
UFO12347.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12668045..12668954 | 1..906 | 97 | | Plus |