UFO12350.5prime Sequence
846 bp (734 high quality bases) assembled on 2012-10-16
> UFO12350.5prime
AGTCGACATGAAAAGGTTATATTTCATATGTGGACTATACTTCCTTATGG
ACTTGGCTAAATGTGAAAATCGCAGGTTACGGATTTTCTTTGATGAGTTT
GCGATCAAGTATAAGGTGCCAGACATTTTCGAAAAAATGGATTGTAATTT
GTATCAAGCGAATAATCGAAGCTACGTCAACGTCGAGATGAAACTGAAAA
AGGAAGTTTCAGATTTGAATGTTCGCGCTATAATGGAGTTTTGGAAGCCA
AATGCCCAAAATAAAATGAAGTTGTACGACGTTCGAGTGGATGGATGTCT
TATACTCCGAACTATTCACAAAAATAAACTATTCTACTTCTATGTGAAGA
GCTTTAAGAAACATTCCAATGTTGTTTTGTCGTGTCCCTTTAAAGCGAAC
TTTACCTACAAAATGGATGATTGGTTTTTGGACGAAGAAGAGCTACCACC
TTTTGCTCCTGTTGGCCAATTCCGCACGGTCACCGAATATTTTTACCCAA
CAACGATTGATAATACGTGTTGTAGCACATGGGGCAGTTTTGCCAAGATC
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCA
TAATCATAATCATAGTCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGCATTCTCACATAAAAACGCCCGGCGCAACCGA
GCGTTCTGACAATCAGATGGAGTTCTGAGTCATTAGCTGATCTATCACAG
AGTCGAGCGAGCTCGATATCAAATTACGCCGCCCTGCACTCATCGCAGTA
CTGGTGTATCATTAGCATTCTGCCGACATGAAGCATCCACAAACGC
UFO12350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33641-RA | 721 | CG33641-RA | 1..543 | 8..551 | 2680 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13529041..13529431 | 7..397 | 1940 | 99.7 | Plus |
| 2L | 23513712 | 2L | 13529490..13529643 | 397..551 | 725 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:13:23 has no hits.
UFO12350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:25 Download gff for
UFO12350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33641-RA | 1..554 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:41 Download gff for
UFO12350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33641-RA | 1..554 | 8..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:11 Download gff for
UFO12350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33641-RA | 1..554 | 8..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:11 Download gff for
UFO12350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13529491..13529654 | 398..563 | 97 | == | Plus |
| 2L | 13529035..13529431 | 1..397 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:41 Download gff for
UFO12350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13529035..13529431 | 1..397 | 98 | -> | Plus |
| arm_2L | 13529491..13529654 | 398..563 | 97 | == | Plus |
