UFO12355.5prime Sequence
1020 bp (905 high quality bases) assembled on 2012-10-16
> UFO12355.5prime
AGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGAAAGTCGACA
AGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAGGCACGCGAT
GCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAA
GAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGGAAGCCCTGA
CCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTGCAGAACGCC
GAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAAGAAGA
CTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCTGTCGG
AAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGCAAAATTCTTGAG
AACCGCGCCCTTGCCGATGAAGAACGCATGGACGCTCTCGAGAATCAGCT
GAAGGAAGCGCGTTTCCTTGCTGAGGAGGCTGACAAGAAATACGATGAGG
TTGCCCGTAAATTGGCCATGGTTGAAGCCGATTTGGAACGTGCCGAAGAG
CGTGCCGAGCAGGGTGAAAACAAAATTGTGGAGCTTGAGGAGGAGCTGCG
CGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAAGGCCA
ACCAACGTGAGGAGGAGTACAAGAACCAGATCAAGACCCTCAACACCCGT
CTAAAGGAGGCTGAGGCTCGTGCTGAGTTCGCTGAACGCTCCGTTCAGAA
ATTGCAGAAGGAAGTCGACAGGCTCGAAGACGAGATGATCAAAGAGATCG
AGCACTATGCCCTCGTCGGCGACAGCTGGACTGACTTCGTGGAGATGATG
GGCATGCCGCATTCTACACGAGCGCTACTGAGCCGCCCACACGGAGCTCA
CGAGGGAGAGAGGCCGCCCTGAAGCGCTGCATGCGAGGCCGAGCGAAGCT
AGGGCCGAGGACTGCCTGCCTCGGCAGGAGCAGGGCAGAGCCTGGGGGAG
GTGGTGCACACGCGGAGGCG
UFO12355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RF | 1684 | CG4898-RF | 106..1141 | 5..1018 | 4485 | 96.8 | Plus |
| Tm1-RO | 1503 | CG4898-RO | 338..1116 | 5..783 | 3895 | 100 | Plus |
| Tm1-RM | 1253 | CG4898-RM | 88..866 | 5..783 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15295113..15295246 | 248..381 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 120..248 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15296590..15296710 | 381..501 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 5..122 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15300747..15300823 | 571..647 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 15299275..15299347 | 498..570 | 365 | 100 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 708..779 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301009..15301074 | 645..710 | 330 | 100 | Plus |
| 3R | 32079331 | 3R | 15305176..15305261 | 778..860 | 300 | 95.3 | Plus |
| 3R | 32079331 | 3R | 15313115..15313197 | 608..690 | 220 | 84.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:13:31 has no hits.
UFO12355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:27 Download gff for
UFO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 101..1106 | 1..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:46 Download gff for
UFO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 101..1106 | 1..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:15 Download gff for
UFO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RF | 101..1106 | 1..984 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:15 Download gff for
UFO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15301011..15301073 | 647..709 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 710..779 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 248..381 | 100 | -> | Plus |
| 3R | 15296591..15296708 | 382..499 | 100 | -> | Plus |
| 3R | 15299277..15299347 | 500..570 | 100 | -> | Plus |
| 3R | 15284641..15284762 | 1..121 | 97 | -> | Plus |
| 3R | 15285229..15285354 | 122..247 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 571..646 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:46 Download gff for
UFO12355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11120835..11120968 | 248..381 | 100 | -> | Plus |
| arm_3R | 11122313..11122430 | 382..499 | 100 | -> | Plus |
| arm_3R | 11124999..11125069 | 500..570 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 571..646 | 100 | -> | Plus |
| arm_3R | 11126733..11126795 | 647..709 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 710..779 | 100 | -> | Plus |
| arm_3R | 11110363..11110484 | 1..121 | 97 | -> | Plus |
| arm_3R | 11110951..11111076 | 122..247 | 100 | -> | Plus |
