UFO12357.5prime Sequence
788 bp (629 high quality bases) assembled on 2012-10-16
> UFO12357.5prime
AGTCGACATGTTAATCGGAGCTCGGCCCATACACAGAGTTTATGATGGCG
TACATGGGTGGCCTAAACCACGTAGCCGAGCCCAGACATGTTTCTGGGAG
ATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTACCACGGTGA
CAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATGAGGCGTCCG
GTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAGCCCGGCACC
ATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAGGCCCGACAA
CTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCAAGGGTCATT
ACACAGAGGGGTGCTGAGCTGGGTGGACTCAGTGCTCGATGTTGTCCCGC
AAGGAGGCCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCACACACT
CCCTTGGGGGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTTCCAA
GATCCGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTTGTGC
CGTCGCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCACCCTG
TCGGTGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCGACAC
GAGCTCTCTACGATATCTGCTTCCGCACCCTCAGCTGACGACACCCACAT
ACGGTGACTTGAACATCTTGTCTCCTGACATGTCGCGTACCACTGCTTCG
ATTCCCGCAACTGAACGCTGATCTCGCAGCTGGCCGTC
UFO12357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RA | 1701 | CG9277-RA | 190..981 | 8..788 | 3435 | 97 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 169..876 | 92..788 | 3015 | 96.6 | Plus |
| betaTub85D-RA | 1841 | CG9359-RA | 288..908 | 92..714 | 1385 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19448114..19448746 | 725..92 | 2710 | 98.3 | Minus |
| 2R | 25286936 | 2R | 24311194..24311410 | 432..649 | 725 | 89.9 | Plus |
| 3R | 32079331 | 3R | 9409316..9409600 | 714..432 | 645 | 85 | Minus |
| 3R | 32079331 | 3R | 9409727..9409995 | 360..92 | 640 | 82.5 | Minus |
| 2R | 25286936 | 2R | 24310905..24311070 | 195..360 | 425 | 83.7 | Plus |
| 2R | 25286936 | 2R | 19449327..19449410 | 91..8 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 27974107..27974342 | 327..92 | 355 | 76.7 | Minus |
| 3R | 32079331 | 3R | 27972919..27973065 | 563..416 | 330 | 83.1 | Minus |
| 3R | 32079331 | 3R | 27969709..27969829 | 678..560 | 265 | 85.1 | Minus |
| 2R | 25286936 | 2R | 24310722..24310832 | 92..202 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:13:34 has no hits.
UFO12357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:28 Download gff for
UFO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 158..953 | 1..788 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:48 Download gff for
UFO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 186..981 | 1..788 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:17 Download gff for
UFO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 186..981 | 1..788 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:17 Download gff for
UFO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19448039..19448746 | 92..788 | 96 | <- | Minus |
| 2R | 19449327..19449414 | 1..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:48 Download gff for
UFO12357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15335544..15336251 | 92..788 | 96 | <- | Minus |
| arm_2R | 15336832..15336919 | 1..91 | 95 | | Minus |
