UFO12360.5prime Sequence
1036 bp (894 high quality bases) assembled on 2012-10-16
> UFO12360.5prime
AGTCGACATGGATATTGCCTTGCGTGGCACAAACAGAGCATCGTCAACAT
CAACGACTGGAACTGGTCTGCATCATGCTGTGTCATTGGGCAACATTGAG
GTCTCCACCAAGACCACCTACTCCAGCCACATGGATCGCAGCTACGACTC
CGAGGATGAACACACTGGTCGCCGAAGACTTCGCCATACGCTGTCCACCG
AGTTGCATCCTCACACTTCTGTTTACTCACGCGGAGATATTCGGGAACAG
TACTGCCTCACAGATCGCCAGTTGCACAGCATAGAGCAGCGTCCTAGGCG
AGAACGATTTTTTGGCTGCCTTTCGCGACGCGGTCAAACGCAATCGGGCA
GTTTTTTGGGCGGCTGTGTGGGTCGGCGGGTGCCCTCCGATGAGAATTTG
GCCGCCTATGCTCCATTTGAAAAATATCCACGCTACCAGAACAGCTATAC
GGACACACACGAATTGGAAAGTTCCTATTTTCGCCGTCAACCGGCCTCGA
TTCTGAGTACTGGTAAATCGGGTGAAGCGGATCTGGGTGGACGCTACACC
TGGATTGGCCAACAGCAGGTGACCAACAACAATCCCGACTACCAATCGGA
CCACAGGTATGGACCGCCTGCAAGGCGATCGAAAGTCGATACAAAAACAG
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTTGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGCGAGTTCTGAGGTCATTACTGGA
TCTATCACCAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTTGTAATTCATTAGCATTCTGCGGACATGG
AGCCATCACAACGGCATGATGAACCTGATTCGCAAGCGGCATCAGACTTG
TCGCCTTGCTATAATATTGCCATGGTGAAACGGGGG
UFO12360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43707-RD | 8194 | CG43707-RD | 643..1287 | 8..651 | 3200 | 99.8 | Plus |
| CG43707-RG | 7617 | CG43707-RG | 643..1241 | 8..606 | 2995 | 100 | Plus |
| CG43707-RF | 7922 | CG43707-RF | 643..1241 | 8..606 | 2995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3758980..3759200 | 432..651 | 1055 | 99.5 | Plus |
| 2L | 23513712 | 2L | 3758735..3758919 | 248..432 | 925 | 100 | Plus |
| 2L | 23513712 | 2L | 3758537..3758676 | 111..250 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 3757898..3757957 | 8..67 | 300 | 100 | Plus |
| 2L | 23513712 | 2L | 3758042..3758089 | 65..112 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:13:18 has no hits.
UFO12360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:23 Download gff for
UFO12360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31959-RB | 268..915 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:38 Download gff for
UFO12360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43707-RD | 643..1290 | 8..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:08 Download gff for
UFO12360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43707-RD | 643..1290 | 8..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:08 Download gff for
UFO12360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3757898..3757955 | 8..65 | 100 | -> | Plus |
| 2L | 3758043..3758089 | 66..112 | 100 | -> | Plus |
| 2L | 3758539..3758676 | 113..250 | 100 | -> | Plus |
| 2L | 3758738..3758919 | 251..432 | 100 | -> | Plus |
| 2L | 3758981..3759203 | 433..655 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:38 Download gff for
UFO12360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3758539..3758676 | 113..250 | 100 | -> | Plus |
| arm_2L | 3757898..3757955 | 8..65 | 100 | -> | Plus |
| arm_2L | 3758043..3758089 | 66..112 | 100 | -> | Plus |
| arm_2L | 3758738..3758919 | 251..432 | 100 | -> | Plus |
| arm_2L | 3758981..3759203 | 433..655 | 98 | == | Plus |
