Clone UFO12361 Report

Search the DGRC for UFO12361

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:123
Well:61
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSpn7-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12361.5prime Sequence

482 bp (282 high quality bases) assembled on 2012-10-16

> UFO12361.5prime
AGTCGACATGAAATACTTGTATCTTCTTTTGTTGGCCACCTCAGTAGAGA
GCGGGTTTTGGGAGGACTTTTATCGAATTCTAGCATCGCAGAATGCAAAA
AGGAACCTCATTTATTCGCCGATATCTGCTGAGATTATTATGAGCATGGT
TTATATGGCATCAGGTGGAAAAACGTTCGAAGAGCTTAGAAACGTTTTGA
AATTTTCTGAGAAAAAAAACCCTTGTGGCAAAACAACTATCGTAGCCTTT
TTAAGCGATCTTAAAGCCCCCCCGAAACGGTTTATTAATCCTGCAATATG
GGCAAAACCGGGAATATTTTGTGAACCAAGAAAAAATTGCCTTTGTTACC
CGGGATTTTAACAGGTTGGGCACGAAAGGGCTTTCAAGGGCCAAAAGCCC
AAGTCGATCCGGTCCAAGACGAATCCCAGTTCAGGTGCGGCCGCGCGATA
GTCCAATAGCTGGGATAATTAAATTCGAAACG

UFO12361.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28B-RB 1186 CG6717-RB 12..443 8..474 1295 89.7 Plus
Spn28B-RA 1248 CG6717-RA 12..443 8..474 1295 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7582005..7582245 21..264 1040 98 Plus
Blast to na_te.dros performed on 2014-11-28 18:13:39 has no hits.

UFO12361.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:30 Download gff for UFO12361.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn7-RA 1..277 6..287 95 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:52 Download gff for UFO12361.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn28B-RA 5..285 1..287 95 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:20 Download gff for UFO12361.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn28B-RA 5..285 1..287 95 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:20 Download gff for UFO12361.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7582000..7582265 16..287 95 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:52 Download gff for UFO12361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7582000..7582265 16..287 95 == Plus