UFO12362.5prime Sequence
858 bp (387 high quality bases) assembled on 2012-10-16
> UFO12362.5prime
AGTCGACATGAGCTGGCTGATCTCAGCGGTGTTCCTCCTGCTGTCCCTTT
GTGCCTTCTCGATGGGCCAGGACACGATTTCGGCGATGTGCCTCTCGGAC
GAACGGTGCACGTCTTTGAAGCGTTGCGAAGACTCGGATGATTCCGGTCG
AAGGGGAATTAGGCCACGCAGCTCACGCATCTGCGGCACCCAAAGGGTCT
GCTGCGAGAAGGCCCAGCTGGACAGCTATGACAGATGGCTGGTTGAGAGA
ACCACAACAGTGCCTTCAACAATTCGAAACAAGGTATCCAGGGTCCTGGA
ACCGCCGCCCGAACGAGAGCTGCGGACAAAACATGGGGGTGTGGTACCCA
GAAAAGTTTGTGCCGCGAAAATTTTATCAACCGACTCGGGAATCAGCCTT
GATTCAATCCGAGGATTAGCCCGATTTCAGTGCAGCAAAGTCCTTTGTAA
CCGCTGTTTGCGCCGTAAAATCAAAAAGGTGGGATGACAGCGAAAAGTCC
GTAACTTGGTGAAAGCAAGGCGAAACTTTAAAGTACAAAGAACTGCGGCT
ACAGCAATCCAAAGGGTCTAATACCCGACAACGACAAGTTCCCCTACTCG
GAGGACGTCTTCCATTTTCGGAGATTTCCCTGGATGGTGGGGCATCTTCA
CTGGGCGCCAAGAGTTTTCTATGCGGCGGCACTTCTCATCCATCCGCGGG
TTGGTAGTTACCACTTCGCACATTCTGGTCAACGAGACGGTGGACACCTT
GGTGTCCAGAGCTGGCGACTGGGATCTGAACAGCCTGAACGAGCCGTATC
CGCACCAGGGCAGCCGTATTAAGGAGATCATCATGCACTCCGAATTTCGA
TCCGAACT
UFO12362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8586-RC | 2473 | CG8586-RC | 100..922 | 8..858 | 3360 | 95.3 | Plus |
| CG8586-RB | 1625 | CG8586-RB | 195..1017 | 8..858 | 3360 | 95.3 | Plus |
| CG8586-RA | 1530 | CG8586-RA | 100..922 | 8..858 | 3360 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8694814..8695235 | 438..8 | 1655 | 96.1 | Minus |
| 2R | 25286936 | 2R | 8694347..8694662 | 858..538 | 1200 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:42 has no hits.
UFO12362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:31 Download gff for
UFO12362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 92..509 | 1..426 | 96 | == | Plus |
| CG8586-RA | 557..921 | 482..858 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:53 Download gff for
UFO12362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 93..510 | 1..426 | 96 | == | Plus |
| CG8586-RA | 558..922 | 482..858 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:22 Download gff for
UFO12362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 93..510 | 1..426 | 96 | == | Plus |
| CG8586-RA | 558..922 | 482..858 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:22 Download gff for
UFO12362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8694347..8694713 | 479..858 | 95 | <- | Minus |
| 2R | 8694780..8695241 | 1..478 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:53 Download gff for
UFO12362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4581852..4582218 | 479..858 | 95 | <- | Minus |
| arm_2R | 4582285..4582746 | 1..478 | 94 | | Minus |
