UFO12365.5prime Sequence
980 bp (863 high quality bases) assembled on 2012-10-16
> UFO12365.5prime
AGTCGACATGTCTCGTCGTTCGACCGTTTTATCAACTGGTAAGGAGAGCT
CCAAGGAGGAAAAGAATCGAATGTCCCAATTGGACGTTATTATCGGTCAA
CTGAAGACGATGGCGGTTGGAAACCGGAGGGCCGGAAATCTATCCGAGGC
CACCATCACATATATATGCCAGGCGAGCCGAGAGCTGTTTCTATCCCAGC
CGATGCTCCTCGAACTGAGTGCTCCGGTAAAGATCTGCGGGGATCTGCAC
GGTCAGTTCAAGGATCTATTGAGGATATTCCAGCAGTGCGGTGTGCCACC
GCTTTCAAACTACCTATTCCTTGGGGATTACGTGGATCGGGGTCACTGCT
CCATCGAGACTTTATCGCTGCTGTTGACCTATAAGCTTCGCTATCCGGAG
ACTTTCTTCCTGCTGCGCGGCAATCATGAATCGGCGGATTTGAATCGGGT
ATATGGGTTTTTCGACGAGTGCAAGCGACGATATAGCATCAAGTTGTGGC
GCTCCTTTGTCGATTGCTATGACTGCATGCCAGTGGCCGCCATCATAGCC
GATCGCATCTTTTGCGTCCACGGCGGACTGAGTCCGGATCTGAATAACCT
GGGATGACATCCGGCGGCTGAATCGCCCCACCGATGTGCCCAGCGATGGG
CTGCTGTGCGATTTGCTTTGGTCGGATCCGGATGAGACCACCGGAACGTG
GGCGTCCAACGATCGAGGTGTCAGCTTCACCTTTGGAGCAACATAGTGGA
GGGCTTCCTCATGCAGCACAAGTTTAACCTGATTGTCCGCGCCCAACAGT
GGTCGAGGATGGCTACGAGTTCTTCGCCGACCGCCAGTTGGTTCACATTT
TTCTCGGGCCCCGACTTCTTGCGACATTTTTGATACTGCGGAGCTGTTCT
GGTGGTGGACGCCAAACTGTCTGCCACTTTGTTCTTCATCGTCTGAGACG
TTTTCGGGACCCATGGGCTTTTTGAGTTGG
UFO12365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpD5-RA | 1279 | CG10138-RA | 93..1058 | 8..971 | 4420 | 97.8 | Plus |
| PpD6-RA | 1327 | CG8822-RA | 471..656 | 409..594 | 345 | 79 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 567..853 | 396..683 | 260 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22041888..22042853 | 971..8 | 4190 | 97.4 | Minus |
| 2L | 23513712 | 2L | 3110142..3110327 | 409..594 | 345 | 79 | Plus |
| 3R | 32079331 | 3R | 12425065..12425351 | 683..396 | 220 | 72.6 | Minus |
| 2R | 25286936 | 2R | 21881870..21881999 | 592..463 | 185 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:47 has no hits.
UFO12365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:32 Download gff for
UFO12365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 22..980 | 1..956 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:48:56 Download gff for
UFO12365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 85..1043 | 1..956 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:26 Download gff for
UFO12365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpD5-RA | 85..1043 | 1..956 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:26 Download gff for
UFO12365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22041904..22042856 | 1..954 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:48:56 Download gff for
UFO12365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17929409..17930361 | 1..954 | 97 | | Minus |
