UFO12368.5prime Sequence
932 bp (828 high quality bases) assembled on 2012-10-16
> UFO12368.5prime
AGTCGACATGGCAGCTGTACACAATCGGACACATTTTATCTGCGGTGGCA
CGCTGATTCATAAGCGATTCGTTTTGACAGCTGCGCATTGCATAGTTGAC
CAAGACGTCCAATCAGTGAGTTTGGGTGCCTACAACAAGAGTGATCCTGC
AGATCGGAAAGACGTCATAACAGCAGTAGTGCATAGTTCGTTTGACGTTC
GTGCTTCCTATGAAAATGACATTGGCCTGCTAAAGCTGTCCAGCGACGTT
ATCTTTAATGCCCTTATTCGTCCAATCTGCATCGTTTTGAACAAGAGTAT
GGCCAACCATATGCGCAACATGCGGACCTTTAAAGCCTTTGGATGGGGAA
CATTACGCGGCAACAAGACATCCGATATACTTCAGACAATCATCCTTAAT
CATTTGGATCGTGAAGAGTGCTATATGGAATTGTCTGTTTATCCCAGTGA
GAAGCAGATATGCGCTGGTGTACCTTCCGGAGACACCTGTGGGGGCGATT
CTGGTGGTCCCCTGACAAACGATGTGTTTATTCAAGGTATCGGCAATCGG
GAAGTTCAGTTCGGGATCATCAGCGTTGGCAAAACATCCTGCGATGGACA
GGGAGTGTATACCGATTTGATGAGCTTTGCGGACTGATTAGATGACATAG
AGAGGTTATCTATCGAGGATGACCACAGTCTGCACCCTTCTACAAAATTA
TACCCAGCAGCAAGATGTTTTTTGTACAACGACTGTGCGCGCCAACATGC
TGCGAATTTGGAGGCACTTATTCGTTGGTCGATTTTTGACTCGGGCATTT
CGTAACCCACCAAAACTCATCAACTGCAGTAAATCTGAAGGAAGACCCAA
TTCTACGGATGGTATAGGTGTCCGGCGTCTTCCCAAATGAATCAAATAGA
TGGTACGCGTGCTTAAGCTTATCGACCCGTGA
UFO12368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30187-RC | 1573 | CG30187-RC | 166..1108 | 8..932 | 4005 | 96.6 | Plus |
| CG30187-RD | 1606 | CG30187-RD | 166..983 | 8..812 | 3760 | 98.3 | Plus |
| CG30187-RD | 1606 | CG30187-RD | 1016..1141 | 812..932 | 250 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22917662..22918198 | 787..260 | 2260 | 97.8 | Minus |
| 2R | 25286936 | 2R | 22918260..22918408 | 260..112 | 745 | 100 | Minus |
| 2R | 25286936 | 2R | 22918567..22918625 | 66..8 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 22918466..22918511 | 111..66 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:13:55 has no hits.
UFO12368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:34 Download gff for
UFO12368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RD | 135..959 | 1..811 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:02 Download gff for
UFO12368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RC | 159..1107 | 1..931 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:30 Download gff for
UFO12368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30187-RC | 159..1107 | 1..931 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:30 Download gff for
UFO12368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22917634..22918197 | 261..811 | 97 | <- | Minus |
| 2R | 22918260..22918408 | 112..260 | 100 | <- | Minus |
| 2R | 22918466..22918511 | 66..111 | 100 | <- | Minus |
| 2R | 22918568..22918631 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:02 Download gff for
UFO12368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18805157..18805720 | 261..811 | 97 | <- | Minus |
| arm_2R | 18805783..18805931 | 112..260 | 100 | <- | Minus |
| arm_2R | 18805989..18806034 | 66..111 | 100 | <- | Minus |
| arm_2R | 18806091..18806154 | 1..65 | 93 | | Minus |
