UFO12373.5prime Sequence
928 bp (806 high quality bases) assembled on 2012-10-16
> UFO12373.5prime
AGTCGACATGCAGACGACGACAAGTCAGCGGCCAGTAACGCCTGGCACTC
CAGACTCGGCGCATATCGTAATCGGCGCCGCGGGATTCGTGGCACACGAG
AGACGCCAGCCCGGAAAGACCCTGATGAATTGCTTTCGCGATCGCTCCAC
GACGTCGTCGTCATCGTCGCAGGCCCAACACGCCTATGTGCGCGGCCACA
GCGTCACCTCGAGCACTCTGTTTCGCCTGGAGGGCAGTGGTGGCTCCAAT
TGCACCTTGGACAAGGCGGGCAAGCAGGATACCGGGCGGCCCGAGGCGGT
CGTCCTACTCAGAGAGCTGAAAACCAGACCCAACAAGCTGGCTCTGCTCA
AGAGCAGCAGCAGCAAGGATCTGACCCGCCTGTTCCTGGACGATTCAACC
AACACAGCCGTGCTGGTGTCCAACACCAGTATAGATGTCTGCTCCTCAAA
TTCCAGCTCTGGCGGCAGTCCGGCGGTGGGCAGGTCCAAGTCCGGCAGGG
ATCGCCGCAATGGACTGGAGTGCTGCAGCAGCTGCTCCAAGCGTTGGCAC
GATCTCAAGCAGCGTATGCACACTCTGGAGCAGGATCTGCTCGTCCAGAC
CACATACAGCCAAGAGCTGGAGCAGAAGTGGGCGAGATGAGTCGCCAGTT
GACGGAACTGCTTCAGGACGCGACAGGGAGAGGGAAAAGGATAAGCGCGC
TTTGCAGCCGCAGCGGCGTTGCTGCGCCTGCAAGCGGACTGCTCACGCAG
TCCCAATGTCGACCTCGCGCTGTGGCTGATGAACCTGTCCAACTGTTCAG
ACAAACCAGCGTGAACGCTGCGGAACAGCGCATCTGCTCGACGAGCCTGA
TCCAATACGGACTGAATGTCATCAGCCCACACACCATGCCCGCACTCGGT
GTGATGCTGCATCTATCTACAAAAGTAC
UFO12373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP16F-RF | 3098 | CG7122-RF | 1080..1955 | 7..861 | 3775 | 96.9 | Plus |
| RhoGAP16F-RE | 2256 | CG7122-RE | 345..1220 | 7..861 | 3775 | 96.9 | Plus |
| RhoGAP16F-RD | 2424 | CG7122-RD | 406..1281 | 7..861 | 3775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18095264..18096023 | 7..760 | 3485 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:05 has no hits.
UFO12373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:37 Download gff for
UFO12373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP16F-RB | 584..1449 | 1..847 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:12 Download gff for
UFO12373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP16F-RD | 401..1266 | 1..847 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:38 Download gff for
UFO12373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP16F-RD | 401..1266 | 1..847 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:38 Download gff for
UFO12373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18095259..18096124 | 1..847 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:12 Download gff for
UFO12373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17989292..17990157 | 1..847 | 97 | | Plus |
