UFO12374.5prime Sequence
688 bp (321 high quality bases) assembled on 2012-10-16
> UFO12374.5prime
AGTCGACATGGCGCGCAAGAATGCCCAGGCGGAGGACCTCTCCAACGTGG
AGTTCGAGACGAGCGAGGATGTGGAGGTGATACCCACATTCAACGCCATG
AATCTAAAGGAGGAGCTGCTACGCGGCATCTACGCGTACGGCTTCGAGAA
ACCCTCGGCCATTCAGCAAAGGAGCATTACGCCTATCGTCAAGGGACGGG
ATGTGATTGCCCAGGCGCAATCAGGCACGGGCAAAAACCGCCACCTTCTC
CATCTCCATCCCTGCAGAGCCTGGACACCACGCTGCCGGGGAGACGCAGG
GTTCTGTGCTTGTCCCCCCACTTCCCGAGTTGGCTGTGCAAAATCCAGAA
AAGTCATTCCTTGCCTCTCGGCACCATGATGAATGGTCCAGTGGCCATGT
GTGGCATCGGGTGGGAACCAACCCGGGGCGAAGGATATCCGCAAATTTGA
ACTACGGGTCAACCCTTTGGGGAGCGGCACTTCCAGGGACAAGTCTTTCG
ACATGAATCAAGCGACGAAGTGCTGCGAAACAAAAGCCCATCAAGGATGC
TAGGTGCTGGAACGAAGCTGACGAGAATGCTTAATAAGGGTTTTCAAGGA
ACAGATATACGATGTTGTATCGCTACTTTGCCACCAGCCCACCCCAGGTG
GTGCTCATCTCAGCTACCTTGCCCCACGAAAATACTCG
UFO12374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4AIII-RA | 1481 | CG7483-RA | 129..773 | 6..688 | 2250 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8313336..8313471 | 6..141 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 8313530..8313725 | 140..342 | 645 | 93.6 | Plus |
| 3R | 32079331 | 3R | 8313976..8314087 | 562..679 | 310 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:09 has no hits.
UFO12374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:38 Download gff for
UFO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 118..452 | 1..342 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:14 Download gff for
UFO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 124..458 | 1..342 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:40 Download gff for
UFO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4AIII-RA | 124..458 | 1..342 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:40 Download gff for
UFO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8313331..8313470 | 1..140 | 97 | -> | Plus |
| 3R | 8313531..8313897 | 141..534 | 89 | -> | Plus |
| 3R | 8313953..8314095 | 535..688 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:14 Download gff for
UFO12374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4139053..4139192 | 1..140 | 97 | -> | Plus |
| arm_3R | 4139253..4139619 | 141..534 | 89 | -> | Plus |
| arm_3R | 4139675..4139817 | 535..688 | 92 | | Plus |
