UFO12375.5prime Sequence
878 bp (685 high quality bases) assembled on 2012-10-16
> UFO12375.5prime
AGTCGACATGAAAACGGGCAGCAACAACAACCACATCTCCGCCAGCAGCA
GCAGCAGCAACAACAACAACAACAGCTCATTGGTGCAACAGCAGCAGCAA
CGCTCCACCACTTCCGTTTCCGTCTCCTCGTCTCACATTGTCACCGAGTG
GGAGGATGGCATCATTTTCGATGTGGACGATCCCGACTTTTGCAATCTGG
CCACCGACAAGCTGAACTTCATAGTGCCATCAGCAGCCAATATGTCGATC
GCCAGTGTTCACGGTCCCCAAATCGCCGACATCTGCAGTCCCCTGTCGCA
TCACAATCTCGGTCTGTCTGCCTCGCTGCCAGATCTGGTGGGCAGTCCCC
TGGAGATCAGCATGGACAACGTGCTGACCATTGAGGAGCTGCGCCAGCAC
ATGGGCTCCTGCTTCACCTGCGGCGTCTCCTGGACGGACGACCATTTTTC
CCTCGACTGCAGCGAATGCGGTGGCTACAGCCTGGAGCGTCCCTGTCCCC
TGTGCGACGGCCAGTGCGGTGTCCAATGGAAACGTGATTTCGCCATGTCC
CATGCCTGCAGTCAAGCTCGCTGGGTGGGCGTGTGCATCAGCTACCCGGA
AGTCGTGCCCGGAGTCCAGTTGCCCGTGGGAGCAGGCGCTGGAGCCGCCA
CCTCGTGTGCCGCTGCCGCTGCGATTCAACTGCGCCTGACCAAGAGCTGT
GCTCCCGCCTGAACAGCTGTCCACGTCGACGGCGAGCAAAGCGGTCGCAT
CGCAAGCTTTCTAGACCATTCGTTGCGCGCGGGCCCAGGTTAAGTTGTCA
TATCATATCATAATCCATATCATATTCACACTAGCCTAGAGATCTGTCAT
GACTAGTGCCTTGATCTCACATAAACGC
UFO12375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RB | 1980 | CG4710-RB | 151..897 | 8..751 | 3570 | 98.8 | Plus |
| Pino-RC | 2130 | CG4710-RC | 518..1047 | 225..751 | 2485 | 98.3 | Plus |
| Pino-RA | 2079 | CG4710-RA | 467..996 | 225..751 | 2485 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 547..298 | 1220 | 99.2 | Minus |
| 2L | 23513712 | 2L | 1128129..1128345 | 224..8 | 1085 | 100 | Minus |
| 2L | 23513712 | 2L | 1115737..1115944 | 751..547 | 830 | 96.6 | Minus |
| 2L | 23513712 | 2L | 1117443..1117518 | 298..223 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:11 has no hits.
UFO12375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:39 Download gff for
UFO12375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 145..903 | 1..757 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:16 Download gff for
UFO12375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 145..903 | 1..757 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:42 Download gff for
UFO12375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 145..903 | 1..757 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:42 Download gff for
UFO12375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1115749..1115943 | 548..740 | 96 | <- | Minus |
| 2L | 1116441..1116690 | 298..547 | 99 | <- | Minus |
| 2L | 1117444..1117516 | 225..297 | 100 | <- | Minus |
| 2L | 1128129..1128351 | 1..224 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:16 Download gff for
UFO12375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1115749..1115943 | 548..740 | 96 | <- | Minus |
| arm_2L | 1116441..1116690 | 298..547 | 99 | <- | Minus |
| arm_2L | 1117444..1117516 | 225..297 | 100 | <- | Minus |
| arm_2L | 1128129..1128351 | 1..224 | 98 | | Minus |
