UFO12377.5prime Sequence
922 bp (783 high quality bases) assembled on 2012-10-16
> UFO12377.5prime
AGTCGACATGGCGGACGTGAGCGATCCCAGCGAACTGTTCGACCTGGAGC
TGCACGACCTGGAACTGCAGGACGACAAGGCCAGGGACTCCGACGACGAC
AGGATCGAGCTGGACGATGTTGACCTAGAACCGGAATTGTGTATTAATCT
GCACCAAGACACTGAGGGCCAGGAGACCATACAGCTCTGCGAGGAGAATG
TTAATCCAGGTAAAATCAAGCTGGGACCCAAGGACTTTGAGCTCAAGAAG
GTCCTTGGCAAAGGTGGTTATGGCAAAGTATTTCAGGTGCGCAAGACCGC
TGGACGAGATGCTAACAAATATTTTGCCATGAAGGTGCTCAAAAAGGCAT
CCATTGTGACCAATCAAAAGGACACAGCGCACACCCGCGCCGAGCGCAAT
ATACTCGAGGCAGTCAAGCATCCCTTCATAGTGGAGCTAGTTTATGCCTT
CCAGACAGACGGAAAACTATACCTTATACTTGAATATCTCAGCGGTGGAG
AGCTGTTCATGCATTTGGAGCGTGAGGGCATCTTCTTAGAGGATACCACA
TGCTTCTATTTAAGCGAAATCATTTTGGCCTTGGGCCATCTACACAAACT
GGGCATCATCTACCGCGATCTGAAGCCCGAGAACATACTGCTCGATGCAC
AGGGACACGTGAAGCTCACGGACTTCGGACTGTGCAAGGAGCACATACAG
AGGGTATTGTCACCCACACCTTCTGCGGCACATGAGTACATGCACTGAAA
TTTGACCAGAGTGACATGCAAGCAGTCGACTGTGTCACTGGGCGCTCTCA
TGTTGACATGCTCCAGAGTCCACCCTCACGCGAGATCGCAGAAGACATGA
AACATTCTGAAGCAGCTCATCTGCAGCTACCTCCACGAGCCAGGGATTTG
GTGCGTCGCCTGATGAGCGGCA
UFO12377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S6k-RB | 4885 | CG10539-RB | 532..1481 | 8..922 | 3860 | 96 | Plus |
| S6k-RA | 3486 | CG10539-RA | 532..1481 | 8..922 | 3860 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5806504..5806685 | 732..552 | 860 | 99.5 | Minus |
| 3L | 28110227 | 3L | 5806945..5807084 | 418..279 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 5806747..5806882 | 552..417 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 5807132..5807260 | 288..160 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 5810288..5810400 | 120..8 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 5807948..5807988 | 159..119 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:16 has no hits.
UFO12377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:41 Download gff for
UFO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 553..1366 | 1..804 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:19 Download gff for
UFO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 527..1340 | 1..804 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:46 Download gff for
UFO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 527..1340 | 1..804 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:46 Download gff for
UFO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5806747..5806880 | 419..552 | 100 | <- | Minus |
| 3L | 5806945..5807076 | 287..418 | 100 | <- | Minus |
| 3L | 5807134..5807260 | 160..286 | 100 | <- | Minus |
| 3L | 5807948..5807988 | 119..159 | 100 | <- | Minus |
| 3L | 5810290..5810403 | 1..118 | 96 | | Minus |
| 3L | 5806493..5806684 | 553..741 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:19 Download gff for
UFO12377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5799593..5799784 | 553..741 | 98 | <- | Minus |
| arm_3L | 5799847..5799980 | 419..552 | 100 | <- | Minus |
| arm_3L | 5800045..5800176 | 287..418 | 100 | <- | Minus |
| arm_3L | 5800234..5800360 | 160..286 | 100 | <- | Minus |
| arm_3L | 5801048..5801088 | 119..159 | 100 | <- | Minus |
| arm_3L | 5803390..5803503 | 1..118 | 96 | | Minus |
