UFO12378.5prime Sequence
1012 bp (793 high quality bases) assembled on 2012-10-16
> UFO12378.5prime
AGTCGACATGAAGGAGTTCTGCCGCACCTGCGGCAAGACCGTCGTGGCCG
ATGAATGCCTTCAGATCTTCACGCCTGCGGGCCGAAAGTTGCTGCAGTGC
GTCCGTTCCATCACAAATTGCTGGCTGCAGAATGTCCAGGATTTGCCCAA
TCACATATGTACGGACTGCCAGGTGCTGCTCAGCCAGGTGCAAAAGTTCC
GGCGGCGTTGTGCCAAGATCGAGAAGTACTTCGCCAGGCGGCGGAGGAGA
ATGAATCTCGGCGAGGCTCCAGCGGCCATGGAGCAACTTCGCGTCCAGCA
GGCAGCTGCTCCGGATCCGCTGGGCATTGACGAGCTGATGTCGGCCAGTG
ACATCAAAATAGAACCCATCCAGTTGCAAATGGAAGAGGACCCACAAGCG
CCGTATCCCGAAAATCAGCTTGAACAAGCTCTTAGCTATGGCAATGCACC
GGGTGAGGACATCCTACCCCTTCCCGAGGACTATGGAGAGGCACAGACTG
AAGTGGCGACCACTACCAACGAGCCAGCACAGCGAAGAGCAAGACACGGC
CAAAATAAAGTCCAAGAAGCACACAATGCGCGTGGGCCGAAAGCTGATCA
TGTAAAGTCATCGATGATAGCAGCAAAGCGTATTGTGGACCGCATGGACC
AGCGCCAGCCTGCATCTGCGAGCACTGCGGCCGGCATTCAAGACACCAGC
ATCTCATGTCATCTGCTGCGGCACACGGCACCAAGCCGTTCGAGTGCGAC
AGTGCACAGAGTGCTACACGCTCACTGCTGCGGCGCACAGCTGACAACAC
GAGGTCCTACGCTGCACTTCTGCGGCTGGAGTACAGCACGACAGCTCGCG
CGTGAACATGAAGGAGCTGCAAGAGGGACGAGCGCGCATCAAGTGGGAGA
TATCAAGAGGCGAGGGCCTTCACTGGAAGGTGGGATCCTGGTCTGCGGGC
GGCACTTAATCCGACTCACCTTCATCATCGAACAACGAAAAAGAAAAAAT
CAATCCACCGCC
UFO12378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4820-RB | 1187 | CG4820-RB | 79..1021 | 8..908 | 3655 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11216792..11217434 | 124..750 | 2440 | 97 | Plus |
| 3R | 32079331 | 3R | 11216613..11216729 | 8..124 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:19 has no hits.
UFO12378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:41 Download gff for
UFO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 1..960 | 6..920 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:22 Download gff for
UFO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 74..1036 | 1..920 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:48 Download gff for
UFO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 74..1036 | 1..920 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:48 Download gff for
UFO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11216608..11216729 | 1..124 | 96 | -> | Plus |
| 3R | 11216793..11217565 | 125..862 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:22 Download gff for
UFO12378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7042330..7042451 | 1..124 | 96 | -> | Plus |
| arm_3R | 7042515..7043287 | 125..862 | 95 | -> | Plus |
