UFO12379.5prime Sequence
981 bp (852 high quality bases) assembled on 2012-10-16
> UFO12379.5prime
GTCGACATGAGTATGAACTACCACAACTACAACAGCAGCTCGCGATTCGA
AATGGTCGTGGAGATAGCCAATATCGCGCTGGATGAGTTCAAGACCCATC
ACATAACGCGCAACTATACGGGCCTCGTGCAGCGCTACTACCAGCTGGTG
GAAGAGGATTACGGCGATCCGCGAGCAAAGCGCTTCCCGCTGATGGAGCA
CCCAATGTTCACCTTTGGCATGGTGGCCGTCTACTTATCCTGGGTCCTGG
TCATTGGACCATTGTTCATGCGCGATCGCAAGCCTTTCCAGCTGCGCCGC
ACCCTGGTCGTCTACAATGCCTTCCAGGTGGCCCTCAGTGGGTATATGTT
CTACGAGCACCTAATGGCAGGCTGGCTGAACTACTACAATCTGAAGTGCC
AACCGGTTGACTACTCCGATAGTCCCAGTTCCAAGCGGATGCTCAACCTG
TGCTACCTGTACTACCTGTCCAAGCTGACCGAGTTCGCCGACACCATGTT
CTTTGTGCTGCGCAAGAAATCCTCCCAAATCACCTGGCTGCACGTGTACC
ATCACTCGGTAACTCCGCTGGAGACATGGGTGCTGGTTAAGTTCCTCGCA
GGTGGAAACGCCACGTTCCCGAATCTGCTGAACAACTTTGTGCACGTTTG
CATGTACTTCTACTACATGATGGCCGCCATGGGACCCGAGTACGCCAAGT
TCCTGTGGTGAAGAAATATATGACCGAGCTGCAGATCGCCCAGTTCGTGC
TGTGCATCTTCCACACCCTCGCGCCTCTCAGCACCAGTGCCAGTTCTCAG
TTCATCTCTGCGCTGCTCTATGATGCATCATTTTCTTCTGCCTCTCATGA
CTCTACATGCAGAGCTACAGGAGACAGGCGGCGCAGCACTGCAGCAGCAG
CAGCAACAGCGAGCACGGCAGCAACTGAATGCCCCGCCCTGCAGGCGGAC
GCACAATAACACGGCGATGCTTGGCGCAAGC
UFO12379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33110-RA | 2005 | CG33110-RA | 315..1311 | 6..979 | 4340 | 97.2 | Plus |
| bond-RC | 1503 | CG6921-RC | 695..781 | 640..725 | 230 | 85.1 | Plus |
| bond-RA | 1627 | CG6921-RA | 819..905 | 640..725 | 230 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22572394..22572585 | 166..357 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 22574361..22574527 | 438..604 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 22570502..22570662 | 6..166 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 22574760..22574900 | 599..738 | 655 | 99.3 | Plus |
| 3R | 32079331 | 3R | 22572665..22572747 | 356..438 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 22555686..22555756 | 640..710 | 205 | 85.9 | Plus |
| 3R | 32079331 | 3R | 22559985..22560078 | 357..264 | 200 | 80.9 | Minus |
| 3R | 32079331 | 3R | 7982832..7982957 | 752..628 | 190 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:22 has no hits.
UFO12379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:42 Download gff for
UFO12379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 309..1310 | 1..981 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:25 Download gff for
UFO12379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 310..1311 | 1..981 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:50 Download gff for
UFO12379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 310..1311 | 1..981 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:50 Download gff for
UFO12379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22570497..22570662 | 1..166 | 98 | -> | Plus |
| 3R | 22572395..22572585 | 167..357 | 100 | -> | Plus |
| 3R | 22572667..22572747 | 358..438 | 100 | -> | Plus |
| 3R | 22574362..22574524 | 439..601 | 100 | -> | Plus |
| 3R | 22574763..22574899 | 602..737 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:25 Download gff for
UFO12379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18396219..18396384 | 1..166 | 98 | -> | Plus |
| arm_3R | 18398117..18398307 | 167..357 | 100 | -> | Plus |
| arm_3R | 18398389..18398469 | 358..438 | 100 | -> | Plus |
| arm_3R | 18400084..18400246 | 439..601 | 100 | -> | Plus |
| arm_3R | 18400485..18400621 | 602..737 | 99 | -> | Plus |
