UFO12380.5prime Sequence
963 bp (822 high quality bases) assembled on 2012-10-16
> UFO12380.5prime
AGTCGACATGATAGAACGGGAAATTATCCACACAACACCTGCCTCGAAGC
GCATCTTCGACGTCCTCAAGGATGTCCTGCAATTTTTCGAGCTCTATGTG
CGAATTCTGTTGGAGCTGTTTGTGTCGCTGGTGCAGATTGTGCTGCCCAA
AAAGCAGAAGGATGTCAGCGGGGAGATAGTTTTGATAACCGGAACTGGGC
ATGGAATTGGTCGGGAGTTGGCCCTACACTATGCTTCATTGGGTAGCACA
GTGGTTTGTGTGGATATCGATGGCAAAAATAATCTGCAGACGGTGGAGAA
GGCCAAACGGCTCAATCTCGGCGAGGTTTACAGCTACAGCTGCGATGTTT
CCAAGCGCGATGAGGTTACGGCACTGGCGGATCGGATCAAGTCGGATGTT
GGATGCATATCGGTGCTGGTTAATAATGTGGGCATAATGCCAACGCATCC
CATTCTGCAGCAATCGGCCGAGGAAATCCAGCGGGTCTTCGACGTGAACG
TGTTCTCGCAGTTCTGGACCATCCAGGCCTTCTTGCCGCACATGCAGGAG
AAGTGTCGTGCCCACATCATTTGCATGTCCTCCATTGCCGGCTTGGTGGG
CATCTCCAACCTGGTGCCCTATTGTGCCACCAAATTCGCTGTACGCGGTC
TGATGGAGGCACTGCATGCCGAATTACGACAGGGACCTTTCAGGATCTGA
TTCGAACCACCACCATCTTTCCCTATATGACCACACTGGACCTCTGCAAG
CATCCCAAAGGTGAGTTCCCATCGATCTGGGCTGCTCGATCCCAAGCAGT
GTCAAAGATCGTGAGCTCATCGCACGACTCATGAGTACCATCCGAGCTGC
TCTCTACATCAACAACTGACGCGACTCTGCCGATCATGCGCTGATGCTTA
GACTTATCGACAGCGGGGTGGAGTCCGATTGATTGCAAGCCTTTCTAGAC
ATCGTTTGGCCGC
UFO12380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14946-RE | 1249 | CG14946-RE | 208..1157 | 7..930 | 3980 | 96.4 | Plus |
| CG14946-RC | 2524 | CG14946-RC | 1483..2432 | 7..930 | 3980 | 96.4 | Plus |
| CG14946-RD | 1386 | CG14946-RD | 279..1228 | 7..930 | 3980 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12063935..12064292 | 694..337 | 1775 | 99.7 | Minus |
| 2L | 23513712 | 2L | 12064350..12064505 | 339..184 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 12064562..12064719 | 188..31 | 775 | 99.4 | Minus |
| 2L | 23513712 | 2L | 12063769..12063871 | 799..699 | 270 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:25 has no hits.
UFO12380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:43 Download gff for
UFO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RC | 1474..2275 | 1..799 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:26 Download gff for
UFO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RD | 273..1074 | 1..799 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:51 Download gff for
UFO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14946-RD | 273..1074 | 1..799 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:51 Download gff for
UFO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12063769..12063870 | 700..799 | 94 | <- | Minus |
| 2L | 12063929..12064289 | 340..699 | 99 | <- | Minus |
| 2L | 12064350..12064504 | 185..339 | 100 | <- | Minus |
| 2L | 12064566..12064719 | 31..184 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:26 Download gff for
UFO12380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12064566..12064719 | 31..184 | 100 | <- | Minus |
| arm_2L | 12063769..12063870 | 700..799 | 94 | <- | Minus |
| arm_2L | 12063929..12064289 | 340..699 | 99 | <- | Minus |
| arm_2L | 12064350..12064504 | 185..339 | 100 | <- | Minus |
