UFO12384.5prime Sequence
625 bp (366 high quality bases) assembled on 2012-10-16
> UFO12384.5prime
GTCGACATGGGCAAGAAGAATTCAAAATTGAAGCAGGACACCATCGATCG
GCTGACAACAGACACATACTTCACTGAAAAGGAAATTCGTCAATGGCACA
AGGGCTTTCTCAAAGACTGTCCGAATGGCTTGCTGACCGAACAAGGCTTC
ATCAAAATCTATAAGCAATTCTTCCCCGACGGAGACCCCAGCAAATTTGC
CTCCCTGGTCTTTCGTGTCTTCGATGAGAATAATGATGGCGCCATTGAGT
TCGAGGAGTTCATTCGGGCCCTGTCCATCACATCACGCGGAAATCTGGAC
GAGAAGCTGCACTGGGCTTTCCCGTTTGTACGACGTGGACAACGATGGCT
ATATAACAACGGGGAGGGGGATGTACAAACATAGGTGGACGCCATCCTAC
CAGGATGGGTAGGACAAACAGCCCGCAGAACGGAGGACCGAAGAAACACC
GCCCCCAAAAAGCGGGGGGGACAAAGATCTTCGGATCAGATGGGAAAAAG
AACCACGACGATCGACCTGACGGCTGGGAGGGAGTTCCCCCGAGGGGCCA
GTAAAGGCTGATCCCCCGTATAGTGCAGGCCGTTTAAGTTTAGGTGGTGA
TGCAAGGCTTTTCTAGACCATTCGT
UFO12384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Frq2-RD | 4161 | CG5907-RD | 649..1210 | 6..601 | 2040 | 93 | Plus |
| Frq2-RC | 4028 | CG5907-RC | 516..1077 | 6..601 | 2040 | 93 | Plus |
| Frq2-RB | 2322 | CG5907-RB | 379..940 | 6..601 | 2040 | 93 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18200655..18200745 | 145..235 | 455 | 100 | Plus |
| X | 23542271 | X | 18200830..18200909 | 235..314 | 400 | 100 | Plus |
| X | 23542271 | X | 18192499..18192563 | 6..70 | 325 | 100 | Plus |
| X | 23542271 | X | 18199773..18199823 | 95..145 | 255 | 100 | Plus |
| X | 23542271 | X | 18168403..18168493 | 145..235 | 215 | 82.4 | Plus |
| X | 23542271 | X | 18201150..18201186 | 322..358 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:03 has no hits.
UFO12384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:37 Download gff for
UFO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Frq2-RC | 508..882 | 1..378 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:10 Download gff for
UFO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Frq2-RB | 373..747 | 1..378 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:36 Download gff for
UFO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Frq2-RB | 373..747 | 1..378 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:36 Download gff for
UFO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18192493..18192563 | 1..70 | 94 | -> | Plus |
| X | 18199124..18199148 | 71..95 | 100 | -> | Plus |
| X | 18199774..18199822 | 96..144 | 100 | -> | Plus |
| X | 18200655..18200744 | 145..234 | 100 | -> | Plus |
| X | 18200830..18200908 | 235..313 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:10 Download gff for
UFO12384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18086526..18086596 | 1..70 | 94 | -> | Plus |
| arm_X | 18093157..18093181 | 71..95 | 100 | -> | Plus |
| arm_X | 18093807..18093855 | 96..144 | 100 | -> | Plus |
| arm_X | 18094688..18094777 | 145..234 | 100 | -> | Plus |
| arm_X | 18094863..18094941 | 235..313 | 100 | -> | Plus |
