UFO12385.5prime Sequence
647 bp (458 high quality bases) assembled on 2012-10-16
> UFO12385.5prime
AGTCGACATGGAAACAGTTCGCACCGGTTCGCTCGAGTGTGCAGTAGATG
ATCCAGCGGCAGGAATGGCGGCCACGATCCAGAACACCCTGAAGGTGGCG
CTGCGAAAGCGCATGAAGGATGCACTGAAGGGCATCGACGCGGAGGCCAT
CGCCCGGCAGTCGCAGGCCGTCACGGCTAAGGTGCTGCAAAGCGAGATCT
TCCGGCAGGCGCAGCGGGTGAGCATTTACCTGAGCACAGCCTCGGAGCTG
GACACCACGGCGCTGCTGTCGGAGATGTTCCGCCTGGAGAAGATGGTCTT
TGTGCCCACCTACGAGGGCAGCAGGATGAAGATGGTGCGGCTGCGCGGCA
TGAGGAGTACGAGAGCCTGCCTCTGACCAAGTGAACATAAAGCAGCCGGA
CTTCAAGGAGGCACGCGAGGATGCCATGACCAACGGGCACGGCATCGATC
TCTTCATTGTGCCCGGTGTGCCTTCACCCGCTGCGAGCTCGGATGACCAT
GGCATGGGCTACTACGACAGTTCCTCAGCAGCACGCGAGAGTATCCGCAC
AAGAAGATCTCGCTGATGCACTGTCGCTCACGAGCAAAAGTCAGCACGAG
GAGTTGCCATGAGTCCCACGACGTCGTTGCACAGTGTATTACGGAAA
UFO12385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34424-RA | 915 | CG34424-RA | 209..866 | 8..647 | 2795 | 96.8 | Plus |
| CG34424-RB | 699 | CG34424-RB | 1..650 | 16..647 | 2755 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23359668..23359926 | 180..436 | 1195 | 99.2 | Plus |
| 2R | 25286936 | 2R | 23359423..23359598 | 8..183 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 23359989..23360142 | 435..580 | 360 | 92.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:33 has no hits.
UFO12385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:45 Download gff for
UFO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 199..859 | 1..644 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:31 Download gff for
UFO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 203..863 | 1..644 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:55 Download gff for
UFO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34424-RA | 203..863 | 1..644 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:55 Download gff for
UFO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23359417..23359596 | 1..181 | 98 | -> | Plus |
| 2R | 23359670..23359925 | 182..435 | 99 | -> | Plus |
| 2R | 23359990..23360214 | 436..644 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:31 Download gff for
UFO12385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19246940..19247119 | 1..181 | 98 | -> | Plus |
| arm_2R | 19247193..19247448 | 182..435 | 99 | -> | Plus |
| arm_2R | 19247513..19247737 | 436..644 | 91 | | Plus |
