UFO12386.5prime Sequence
627 bp (305 high quality bases) assembled on 2012-10-16
> UFO12386.5prime
AGTCGACATGGCCGAACTGGACGATTTCTTCGCGAAAAAGGACAAGAAGA
AGTCCAAGAACAAGACTAAGTTCGTGACCGCCGACGAGATGGTGAAGAAC
CTGGAGGACGGCACCAAGCGCGAGGTGGTCAAGCCCAAAAAACCTGAGGT
AGCCGCTGGCGGCGTGGCAGTAGTAGGCGAAAACGAGAATAGCGGCACCA
AGGTGCCAGAGTCCGCCCCGCCCGTCGAGGAGGAATGGAAGGAGTTCGAG
GAGGAGCAGCGCAAGGACTACAGTTGGCTTAAAGATCGGCCAGCTGAGCA
ACCATCTCCTTTCGGCCCGTTTCCAGAACTGCCCAGGGAAAAGTTTCCGA
AGTCCGCAAGCTGCTTCGAAGTTGCCCTTCTGCCCCGGGACGGGCGGCAA
CTACAATGAAGGACGATGAAGGACAGCAATTGGGGTATTGACCAACGGCG
GGACGTAAACAAGGGAGCGGGGTCCGCCCACGGACCCTGGAAGAAATGTT
TGTCCCAGCCGGAGGAGGTAATGCAAAATTCCGGTGCCCGTGGGAGGGTG
AAAAAGCACCTCGTCCAAGACCTACGTTTCACCCCGCGCCTAACGATACA
GCCAGCAGGCCCGGAAGTTGAACTGGG
UFO12386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3760-RA | 1060 | CG3760-RA | 89..670 | 7..627 | 2085 | 92.9 | Plus |
| CG3760-RC | 1240 | CG3760-RC | 201..764 | 7..627 | 1825 | 90 | Plus |
| CG3760-RB | 1128 | CG3760-RB | 89..652 | 7..627 | 1825 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24938460..24938673 | 7..220 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 24938759..24938838 | 220..300 | 355 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24939103..24939202 | 478..584 | 195 | 89.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:36 has no hits.
UFO12386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:46 Download gff for
UFO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 119..703 | 1..627 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:34 Download gff for
UFO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 86..670 | 1..627 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:57 Download gff for
UFO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3760-RA | 86..670 | 1..627 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:57 Download gff for
UFO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24938457..24938673 | 1..220 | 98 | -> | Plus |
| 2R | 24938760..24938842 | 221..305 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:34 Download gff for
UFO12386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20825980..20826196 | 1..220 | 98 | -> | Plus |
| arm_2R | 20826283..20826365 | 221..305 | 97 | -> | Plus |
