UFO12387.5prime Sequence
890 bp (738 high quality bases) assembled on 2012-10-16
> UFO12387.5prime
AGTCGACATGGAACCGTCAGCCTGCGAAGATCTCAAGGCCTTCGAGCGGC
GCCTCACCGAAGTGGTTTCATCGTACCGTCCCTCGACGTTCCGCTGGCGC
ATTGTCCTTTCCGCCATGTCCATGTGCACCGCCATCAGCGCCTGGTACTG
GCTACGCGATCCGCGCACCACCGTTGTACCGCTAACGGAGTCCCTCTGGA
TTCATCCCGTCTTCACAGTCGCCACCCTAACATTGGTCGTCCTGTTCATC
CTGGGCATACAGAAACTAGTCATAGCTCCGCAAATAATTACATCGAGAAC
GCGAATGGTACTGGGAGACTTTAATATGAGCTGTGACGACACGGGGAAGC
TGATACTCAAGCCGCGGCAAAGTAACAACAACAGTACAGCAAGCTTTTTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGCATCAGCACCTGTCGCTGCGT
TATATTTGCCCATGTGAAACGGGGCGAGAGGTTGTCCATATGCCACGTTT
AATCAAACTGGTGAAACTCACCCAGGGATTGCTGAACGAAAACATATTCT
CATAAACCTTTAAGGAATAGGCCAGCTTCACCGTAACACG
UFO12387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8009-RA | 804 | CG8009-RA | 159..539 | 8..388 | 1905 | 100 | Plus |
| CG8009-RB | 863 | CG8009-RB | 159..551 | 8..388 | 1775 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10639214..10639366 | 236..388 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 10638566..10638700 | 102..236 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 10638421..10638494 | 28..101 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 939..977 | 91..54 | 111 | 79.5 | Minus |
UFO12387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:47 Download gff for
UFO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 145..537 | 1..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:36 Download gff for
UFO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 152..544 | 1..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:59 Download gff for
UFO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8009-RA | 152..544 | 1..394 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:59 Download gff for
UFO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10638423..10638494 | 30..101 | 100 | -> | Plus |
| 3L | 10638566..10638700 | 102..236 | 100 | -> | Plus |
| 3L | 10639215..10639366 | 237..388 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:36 Download gff for
UFO12387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10631523..10631594 | 30..101 | 100 | -> | Plus |
| arm_3L | 10631666..10631800 | 102..236 | 100 | -> | Plus |
| arm_3L | 10632315..10632466 | 237..388 | 100 | == | Plus |
