UFO12388.5prime Sequence
887 bp (725 high quality bases) assembled on 2012-10-16
> UFO12388.5prime
AGTCGACATGAGCGCTACCTGGGTAACGATTCTCAGCATCTCGACTTGTG
TGGTTCTGCTGAAGCTCAGTGAGATCAGGAGCAAGGAGAGCTGTTATTAT
GTGACCTTCACGTATGCCAATTGGACGGATGACCGACCTCGGTTTGTTGT
GAACATGACCTTCTCGAATCAGACTGGCATCGGCTCAGTAACCACCATTA
ACGAGGAGATTGCCTCACCGGTGTCTCGCATCCTCATACTTCAGCACTCC
GGTCGGGGTAAGCCTCGCACCATATACAACGCCTCCACCAAACTGTGCGA
CCTGCAGAATGTCTTCAATTCCGTACCGCTTTTTAAGCCAGCCAAGGACA
ACATGCTCAAGCAAAGTAACTACACGCTGAGCTGTCCTCTGGTCAAAGGC
ACATACGTCATGATCAACATGCGCGTAAGCCCCAAAAACCCACTTCTGAG
CCTTTCTCTACCAACCGAAACAAACGTTCTCCGTGAGTGGCGGCTTGTTT
GAAGAACTTTCACGTGGCCGCAGACTAAGGGGCGCTGTCCACCTACTTCA
TGACTGGAAAGGTTGTGAAAAAGTACTGTGGATCCAATGAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATAATCATAAT
CATATCATAATCATATCACAACTAGCCTAGGAGATCCTGTCATGACTAGT
GCTTGATTCTCACAATAAAAAACGCCAGCGCAGCGACGTCTGACAATCAG
ATGAGTTCTGAGGTCATACTGATCTATCACAGAGTCAGCGAGCTCGATAT
CAAATACGCCCGCTGCCATCATCGCAGTACTGTGTAATCATAAGCATCTG
CGACTGAGCCATCAAACGGCATGATGACCTGAATCGC
UFO12388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31976-RB | 2206 | CG31976-RB | 1388..1970 | 7..591 | 2875 | 99.7 | Plus |
| CG31976-RC | 1014 | CG31976-RC | 196..778 | 7..591 | 2875 | 99.7 | Plus |
| CG31975-RC | 2206 | CG31975-RC | 1388..1970 | 7..591 | 2875 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 138698..139200 | 591..87 | 2425 | 99.6 | Minus |
| 2L | 23513712 | 2L | 139256..139337 | 88..7 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:43 has no hits.
UFO12388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:48 Download gff for
UFO12388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31975-RC | 1385..1975 | 1..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:38 Download gff for
UFO12388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31976-RB | 1385..1975 | 1..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:01 Download gff for
UFO12388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31975-RC | 1385..1975 | 1..596 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:01 Download gff for
UFO12388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 138693..139198 | 89..596 | 99 | <- | Minus |
| 2L | 139256..139339 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:38 Download gff for
UFO12388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 138693..139198 | 89..596 | 99 | <- | Minus |
| arm_2L | 139256..139339 | 1..88 | 95 | | Minus |
