UFO12389.5prime Sequence
528 bp (319 high quality bases) assembled on 2012-10-16
> UFO12389.5prime
AGTCGACATGTTTTGTTTACTTTTGCGCCGCTCTGCAGTTCATAATTCCT
GCAAATTAATCAGTAAACAGATTGCCAAGCCCGCGTTCTACACACCCCAC
AATGCTCTGCACACCACAATACCGCGGCGGCATGGCGAGTTCGAATGGCA
GGATCCCAAGTCCACGGATGAAATAGTGAACATCACATATGTGGACAAGG
ATGGAAAGCGCACCAAGGTCCAGGGCAAAGGGGGCGAAAATGTTCTGTAC
TTGGCCCATCGCCATGGGAATCGAGGATGGAAGGCGGCCTGGGGAGGGCT
TTCGCTGGCCTGCACCACCCTGTCAACGGTGTACGTTCAAGCATGATTTA
CCTTGCCAGAAAGTTAAAAGAGAGGCCGGAGGGAGCAAGGAGAGGACGAC
CCTGCCTGGAATATGGGCGCCCATTTCTTGCGCCAAAGAACTCCCGGGCT
CGGCTTGTCAAAATACCTCCCTCGACAAAGAGTTATGGGAGGGCATGGAA
ACTGGAGCTGCCCAAAGGCCACCAAGAA
UFO12389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdxh-RB | 723 | CG4205-RB | 49..530 | 8..528 | 1555 | 91.2 | Plus |
| Fdxh-RA | 715 | CG4205-RA | 41..522 | 8..528 | 1555 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9370904..9371018 | 122..8 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 9370610..9370702 | 267..175 | 435 | 97.8 | Minus |
| 3L | 28110227 | 3L | 9370765..9370816 | 174..123 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:47 has no hits.
UFO12389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:48 Download gff for
UFO12389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RB | 49..389 | 8..361 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:40 Download gff for
UFO12389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 41..381 | 8..361 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:02 Download gff for
UFO12389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 41..381 | 8..361 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:02 Download gff for
UFO12389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9370765..9370816 | 123..174 | 100 | <- | Minus |
| 3L | 9370904..9371018 | 8..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:40 Download gff for
UFO12389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9363865..9363916 | 123..174 | 100 | <- | Minus |
| arm_3L | 9364004..9364118 | 8..122 | 100 | | Minus |
