UFO12390.5prime Sequence
933 bp (829 high quality bases) assembled on 2012-10-16
> UFO12390.5prime
AGTCGACATGGACCACGCCCATCACAGTGCGCCCGGTGTTGATCACTCGA
TGCATCACGATCATGTGGGCATGCACCACGATCACAGCGGTATACCTGCT
GCGACAGCGTCTCCAATGGATGCAGCTTCCATGTTCGACCTGATCCCCGA
TACCAGCGATTTGCAGGCAAGTCACGCGGGTCACGCCGCTCACGGAGCGC
ACAATCATGGCGGTGGCTCTGGCACGGGAATGGAGCACATGATGCCCATG
GCGTTCCATTTTGGCTACAACGAGACGATCCTGTTCTCCTGGTGGCACAT
CGAAACAGTGGCCGGTTTGATCGGCTCCATGATCGCCATCTTCCTGCTGG
CCCTAATGTACGAGGGACTGAAGTACTACCGCGAGTATCTATTCTGGAAG
ACATACAATCTGCTGGAATATCGACCTGTGACGGGGCCACAAAGAAATCC
GGAGGCACCGCGCATACCATCGCCGGCAGCGGCAGCTCCATCGCCCGTTC
AACCTTCGATGCTGTCGATTAACCACCTGCTCCAGACACTGCTGCACGTG
CTCCAGGTGACGCTGTCCTTCCTGCTCATGCTGATCTTCATGACATACAA
CGTGTGGCTCTGCCTGATGGTTGTCCTGGCGCCGCCGTTGGTTACTTCCT
CTTCTGCTGGAAGAATCGGTTATCGTGACGTAACCGAGCACTGTCACGCA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCA
TATCATATCATATCATATCACACTAGCCTAGAGATCCTGTCATGACTAGT
GCTTGATTCTCACATAAAAACGCCCGCGCACGAGCGTTCTGAACAATCCA
GATGAGTTCTGAGTCATTACTGATCTATCCACAGGATCAGCGAGCTCGAA
ATCAATTACCCCCCCGCCCTGCCACTCTTCCAG
UFO12390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctr1A-RB | 1575 | CG3977-RB | 303..995 | 8..697 | 3390 | 99.6 | Plus |
| Ctr1A-RA | 2103 | CG3977-RA | 201..893 | 8..697 | 3390 | 99.6 | Plus |
| Ctr1A-RD | 1503 | CG3977-RD | 201..695 | 8..502 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6665438..6665686 | 253..501 | 1245 | 100 | Plus |
| X | 23542271 | X | 6665161..6665373 | 41..253 | 1065 | 100 | Plus |
| X | 23542271 | X | 6666850..6667048 | 502..697 | 845 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:50 has no hits.
UFO12390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:49 Download gff for
UFO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 194..893 | 1..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:42 Download gff for
UFO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 194..893 | 1..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:04 Download gff for
UFO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1A-RA | 194..893 | 1..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:04 Download gff for
UFO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6665162..6665373 | 42..253 | 100 | -> | Plus |
| X | 6665439..6665686 | 254..501 | 100 | -> | Plus |
| X | 6666850..6667048 | 502..697 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:42 Download gff for
UFO12390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6559195..6559406 | 42..253 | 100 | -> | Plus |
| arm_X | 6559472..6559719 | 254..501 | 100 | -> | Plus |
| arm_X | 6560883..6561081 | 502..697 | 98 | == | Plus |
