UFO12391.5prime Sequence
843 bp (824 high quality bases) assembled on 2012-10-16
> UFO12391.5prime
AGTCGACATGGCCGAAGTGCGACGCAGGAAGGGCGAGGATGAGCCACTGG
AGGACACGGCCATCTCCGGATCTGACGCAGCCAATAAGCGCAACTCCGCC
GCCGACTCCTCGGACCATGTGGACTCCGAGGAAGAGAAGATTCCCGAGGA
GAAGTTCGTCGACGAACTGGCCAAGAATCTGCCGCAGGGAACCGACAAAA
CGCCCGAGATATTGGACTCGGCCCTCAAGGATCTGCCGGATAGATGGAAG
AACTGGGTGATTCGCGGCATCTTCACATGGATTATGATCTGCGGCTTCGC
ATTGATCATCTATGGTGGACCGCTGGCCTTGATGATCACGACGTTACTGG
TGCAGGTGAAGTGCTTCCAGGAGATCATCTCGATTGGCTACCAGGTTTAT
CGAATTCATGGCTTGCCCTGGTTCCGAAGCCTTTCCTGGTATTTCCTGCT
TACCTCAAATTACTTCTTTTACGGAGAGAATCTGGTAGACTACTTTGGCG
TTGTAATTAATCGGGTGGAATATCTGAAGTTCCTGGTGACCTATCACCGG
TTCCTTTCCTTCGCCCTGTACATCATCGGGTTCGTTTGGTTCGTGCTCTC
ACTGGTGAAGAAGTATTACATCAAACAATTCAGCCTGTTTGCCTGGACCC
ATGTATCCCTGCTGATTGTCGTCACCCAGAGTTACCTCATCATACAGAAT
ATATTTGAGGGGCTCATTTGGTTCATCGTACCTGTTTCGATGATAGTGTG
CATGATGTCATGCGTACGTGTTCGGTTTCTTCTTTGGGCGCACTCCCCTC
ATCAAGCTCAGCCCCAGAGACCTGGGAGGTTCTCTCCGGGGGT
UFO12391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CdsA-RB | 2609 | CG7962-RB | 424..1249 | 8..829 | 4030 | 99.5 | Plus |
| CdsA-RA | 2391 | CG7962-RA | 206..1031 | 8..829 | 4030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8129851..8130152 | 517..816 | 1410 | 99.3 | Plus |
| 3L | 28110227 | 3L | 8129613..8129791 | 340..518 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 8129080..8129208 | 115..243 | 630 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8128259..8128371 | 8..120 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 8129450..8129548 | 242..340 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:14:53 has no hits.
UFO12391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:50 Download gff for
UFO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 200..1047 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:44 Download gff for
UFO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 198..1045 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:06 Download gff for
UFO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CdsA-RA | 198..1045 | 1..843 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:06 Download gff for
UFO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8128251..8128369 | 1..118 | 96 | -> | Plus |
| 3L | 8129084..8129208 | 119..243 | 100 | -> | Plus |
| 3L | 8129452..8129548 | 244..340 | 100 | -> | Plus |
| 3L | 8129614..8129790 | 341..517 | 100 | -> | Plus |
| 3L | 8129852..8130181 | 518..843 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:44 Download gff for
UFO12391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8121351..8121469 | 1..118 | 96 | -> | Plus |
| arm_3L | 8122184..8122308 | 119..243 | 100 | -> | Plus |
| arm_3L | 8122552..8122648 | 244..340 | 100 | -> | Plus |
| arm_3L | 8122714..8122890 | 341..517 | 100 | -> | Plus |
| arm_3L | 8122952..8123281 | 518..843 | 97 | | Plus |
