UFO12395.5prime Sequence
431 bp (238 high quality bases) assembled on 2012-10-16
> UFO12395.5prime
AGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAGGCGGAGCCC
AGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTCAACTCGATG
GCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTTCTCGGCATA
CCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACACCGCCGAGG
AGCGCAAGGCCTTCTCTTACTTGATGGTCGGCGCCGGGGCGTGGGCGGTG
CCTATGCGGGCAAGGGCCTGTTAACACCTTCCTCGATCGAGAGCCCCTCC
GCGAAATGGTGGCCATGGCCAAAATCAAATCAAGCTGCCCAACTCCCGAA
GGGCAGTTCGTTTATTTCAAGGGGGGGGGAAGGCCCTGTTTTCCCCCCCC
GAAGGGCCCGGAAATCGAAACAAAGCAAAGG
UFO12395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RFeSP-RE | 1000 | CG7361-RE | 85..506 | 8..418 | 1475 | 91.7 | Plus |
RFeSP-RD | 1118 | CG7361-RD | 85..506 | 8..418 | 1475 | 91.7 | Plus |
RFeSP-RB | 851 | CG7361-RB | 85..506 | 8..418 | 1475 | 91.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1613194..1613424 | 326..101 | 785 | 94.4 | Minus |
2L | 23513712 | 2L | 1613983..1614076 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:14:30 has no hits.
UFO12395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:44 Download gff for
UFO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RA | 100..448 | 1..343 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:29 Download gff for
UFO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 78..426 | 1..343 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:53 Download gff for
UFO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RFeSP-RB | 78..426 | 1..343 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:53 Download gff for
UFO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1613176..1613423 | 102..343 | 93 | <- | Minus |
2L | 1613983..1614081 | 1..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:29 Download gff for
UFO12395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1613176..1613423 | 102..343 | 93 | <- | Minus |
arm_2L | 1613983..1614081 | 1..101 | 96 | | Minus |