Clone UFO12395 Report

Search the DGRC for UFO12395

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:123
Well:95
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRFeSP-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12395.5prime Sequence

431 bp (238 high quality bases) assembled on 2012-10-16

> UFO12395.5prime
AGTCGACATGATGAACGCCGTGTCGCGTGCTTACGTCAGAGGCGGAGCCC
AGGTCCTCTCCACGGGATTGAAGGCGAGCGGCGTGGCCGTCAACTCGATG
GCCAATCGCCAGGCACACACCGACCTGCAGGTGCCAGACTTCTCGGCATA
CCGCCGGGAGTCCGTGAAGGACAGTCGTCGTCGCAACGACACCGCCGAGG
AGCGCAAGGCCTTCTCTTACTTGATGGTCGGCGCCGGGGCGTGGGCGGTG
CCTATGCGGGCAAGGGCCTGTTAACACCTTCCTCGATCGAGAGCCCCTCC
GCGAAATGGTGGCCATGGCCAAAATCAAATCAAGCTGCCCAACTCCCGAA
GGGCAGTTCGTTTATTTCAAGGGGGGGGGAAGGCCCTGTTTTCCCCCCCC
GAAGGGCCCGGAAATCGAAACAAAGCAAAGG

UFO12395.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-RE 1000 CG7361-RE 85..506 8..418 1475 91.7 Plus
RFeSP-RD 1118 CG7361-RD 85..506 8..418 1475 91.7 Plus
RFeSP-RB 851 CG7361-RB 85..506 8..418 1475 91.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1613194..1613424 326..101 785 94.4 Minus
2L 23513712 2L 1613983..1614076 101..8 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:14:30 has no hits.

UFO12395.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 13:32:44 Download gff for UFO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RA 100..448 1..343 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:49:29 Download gff for UFO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 78..426 1..343 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:53 Download gff for UFO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 78..426 1..343 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:53 Download gff for UFO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1613176..1613423 102..343 93 <- Minus
2L 1613983..1614081 1..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:49:29 Download gff for UFO12395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1613176..1613423 102..343 93 <- Minus
arm_2L 1613983..1614081 1..101 96   Minus