UFO12401.5prime Sequence
1150 bp (1032 high quality bases) assembled on 2012-10-19
> UFO12401.5prime
AGTCGACATGAAAATATCTCGTTTTAAGAAGTCGCACAAAACTCTGGTGT
TTTTTGCCAGCAATTTCGACTACCGGGAACCCTACCAAGTGCTAATTGAT
GCCACCTTTTGCCAAGCAGCCCTTCAGCAAAAGATTGGCATAGATGAGCA
GATTAAAAAGTACTTCCAGTGCGGCGTTAAGCTACTGACCACCCAGTGTG
TTATTCTGGAGTCGGAATCCCTGGGTGCTCCTCTCACTGGAGCCACATCC
ATCGTCAAGCGATTCCATGTCCACAAATGCGGACACGAAGGAAAACCAGT
CCCCGCTTCCGAATGCATCAAATCGATGACCAAAGACAATCGCTATGTGG
TTGCCTCGCAAGATCGTCTGCTGCAGGAGAGTCTTCGCAAGATTCCCGGA
CGTTGTCTGCTCTATCTGCACAAAGCCACTCCCGTCTTGGAAGCACCATC
TAAAGCCTCCAAGAAGTGGGTGCAACGACGGGCCAAAAACCTAATGCTGG
GCAAACAGGTCGAGAAAATCGACTACATGAAGGAGAAGCAGGGACTGAAG
CCAGCTGAAACTGCAGTCAAACCCAAGAAGCACAAAGGGCCCAAGAACCC
CAATCCATTGTCCTGCAAGAAGAGCAAAAAGGACAAGGCGAAGCAACAGC
TCAAAGGAGTTGAGCAGACCGCAATAACCAAGGCGAAACGAAAACGAGTC
AAGATCCCAGCGCACGTCAAGGCAGCGCTAGGAAAAGATGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCAGATGGAGTCTGAGGTCATTACTGGATCTATCACAGGAGTCC
AAGCGAGCTCGATATCAATTACCGCCCCGCCTGCACTCATCGCAGTACTG
TGTAATTCATCAGCATCTGCGAATGAAGCCATCACAACCGCATGATGACC
TGATCGCAGCGGCTCACACCTTCGCTTGCTAAAATTGCCATGGGGAAACG
GGGAAGAGTTTCGATTGCCAGTTATCAACTGGTAATTCCAGAATGCTGAG
UFO12401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17652-RB | 1198 | CG17652-RB | 93..825 | 7..739 | 3665 | 100 | Plus |
| CG17652-RA | 873 | CG17652-RA | 93..825 | 7..739 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1731406..1731817 | 739..328 | 2060 | 100 | Minus |
| 2L | 23513712 | 2L | 1731880..1732082 | 328..126 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 1732144..1732264 | 127..7 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:31 has no hits.
UFO12401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:29 Download gff for
UFO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 88..831 | 1..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:55 Download gff for
UFO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 88..831 | 1..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:02 Download gff for
UFO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17652-RA | 88..831 | 1..747 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:02 Download gff for
UFO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1731400..1731816 | 329..747 | 99 | <- | Minus |
| 2L | 1731880..1732080 | 128..328 | 100 | <- | Minus |
| 2L | 1732144..1732266 | 1..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:55 Download gff for
UFO12401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1731400..1731816 | 329..747 | 99 | <- | Minus |
| arm_2L | 1731880..1732080 | 128..328 | 100 | <- | Minus |
| arm_2L | 1732144..1732266 | 1..127 | 96 | | Minus |
