UFO12403.5prime Sequence
1142 bp (1023 high quality bases) assembled on 2012-10-19
> UFO12403.5prime
AGTCGACATGGATCGTCTGCAGCAGGTCGGCGTTCAGCAGTTGGGTGATC
TGAAGCGTGTTTTCACCCGGGAATGGCCAAAATACTGCAAGGAGTACTAC
TGCCTGGACACGTTTCTGGAGCTATATAAAAAGGACGATCAGCTGAAGGA
TGTGCAAGTCTATGCTCTTCCCAATCTAGAGCTCGGAATATTTGTGATCG
TGGATCACTATCAGATATTTGTGGGCTTCCTGGAAGCTGAACAATCAGAA
AGCCTTTTCAAGGAGTCCTTACTCAAGTTTAAGCTCTATGGAGGCGAACA
GTTCGCCTCAATGCCAAAAAGGTATTTCAATGTTGCCAACGACATTATTC
AAGCGAAGAATCTGAAACTAGATCTCGACTGTGTAACACTTTCCCTGGTC
TTGAGCAAAGAGGAAGCCCTGCTTTTTCAAGTAGAACCTCCAGCCGGATT
TTCCCTTAAGCCGGTAGATATAGACGATGCTCAGGTGATTAATGATCAAT
GGGAATGGAGTGAGCCGGATTCCCTTTCCGTGGTCCGCCGTCAAATTCTG
GCTCCAGATGGCTTATTGGCAGTCCTTCAGGTCAAGACGACCTACAAACG
CAGAGGCTTCGGCCAACTGATTGTGAAGGAATTTGCGAGACAAGAGGCTC
TGCTGGGACGCGATACAATCACCGAAGTGGTTCCGGAAAACAAGGCATCC
TTGGGCCTGTTCACCAAACTGGGCTTTAAAATCAACGACCAGTGTCACTG
GCTGATGACGGAGCCGCCAAAAGGAGTTCGAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAGC
GAGCTCGAAATTCAAATACGCCCCGCCTGCCACTCATCGCAGTACTGTTG
TATCATAAGCATTCTGCGAATGAAGGCAATCAAAACGCATGATGAACTGG
ATTCGCACGGAATCGACCTTGGCCTTGCTATATATTGGCCAT
UFO12403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15155-RA | 909 | CG15155-RA | 11..789 | 3..781 | 3880 | 99.9 | Plus |
| CG15155-RB | 906 | CG15155-RB | 11..786 | 3..781 | 3825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18155119..18155352 | 202..435 | 1170 | 100 | Plus |
| 2L | 23513712 | 2L | 18155591..18155822 | 550..781 | 1160 | 100 | Plus |
| 2L | 23513712 | 2L | 18154861..18155061 | 3..203 | 990 | 99.5 | Plus |
| 2L | 23513712 | 2L | 18155415..18155529 | 436..550 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:16:37 has no hits.
UFO12403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:31 Download gff for
UFO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 1..783 | 6..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:00 Download gff for
UFO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 9..796 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:06 Download gff for
UFO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15155-RA | 9..796 | 1..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:06 Download gff for
UFO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18154859..18155060 | 1..202 | 98 | -> | Plus |
| 2L | 18155120..18155352 | 203..435 | 100 | -> | Plus |
| 2L | 18155415..18155528 | 436..549 | 100 | -> | Plus |
| 2L | 18155591..18155829 | 550..789 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:00 Download gff for
UFO12403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18154859..18155060 | 1..202 | 98 | -> | Plus |
| arm_2L | 18155120..18155352 | 203..435 | 100 | -> | Plus |
| arm_2L | 18155415..18155528 | 436..549 | 100 | -> | Plus |
| arm_2L | 18155591..18155829 | 550..789 | 98 | == | Plus |
