UFO12404.5prime Sequence
861 bp (861 high quality bases) assembled on 2012-10-19
> UFO12404.5prime
AGTCGACATGACAAGTCGCTGGCTGCTATTAAGTTTGCTACTCTATTGGG
GTAGCCAGGAGGTCTCCTCGGGTGTGATGGACAACTTTGGCGATGGCTTG
AAAATGGCCGGGCAAATGTTTGGCATCAATACGGCAGCAGATGTGGCAAA
TCTGGTAGCCAAGGCATTCTCCGGCAATTCTATGGCAAATGTACCCAATT
TGATTAGCTACGCCCAGAGTGGATTCCAAGGGCTGCGGCAAAACAATGGT
GCGGATGAACAGGAGGAGGATCAATCGGAGCAGCAATCGGAAACGGAAAA
TGTCCAGGAAGAACCTCCGGTGGAGAACACAACCCGAAAACCTCCTCCGA
TAACCTTCGATTCCGGGCAAATGCTCTCCAATATGTTGAGAATGGTGGGT
TTTGATACGCGGAAAATAGGAGCCCTAGCCTTAAATGCATTGATTATGGT
TGCTCAGGCGATTGGTAGCTCCCTGCTGCAGGTTACTCGGGGAGGTGGAA
CATCTTTAATCGATGCTACGGAATCCCTGTATGAACCCAGCGATCATCGA
CCACGTTCCCTATCCATGGGATCGCCCATCGATTGGTTTATGCAACGTAC
AGATCGCTATAGCAAACGACTAATCAAGGATATCATGGATCGGGATTTGC
CCGACTACATACTAGACATGATCGAAGCCAAGGAACAACCCGAGGAGGGT
AAACCGCTGGTTGCCTAAGCTTCTGATGTGCAGGGTCAACCAATCATTTG
GGGAATGCCAGGAATCGTTAAAGAAACGCCTGGCCTGGAGAACCTGAAGA
GCCCGATGATACGATAGCTACTTTAACAAGAAAATCTTATTTAAACCTTC
GCCCAGTCTTG
UFO12404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32040-RA | 1364 | CG32040-RA | 304..1159 | 8..861 | 4095 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9354336..9354788 | 8..460 | 2265 | 100 | Plus |
| 3L | 28110227 | 3L | 9354849..9355252 | 460..861 | 1685 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:16:40 has no hits.
UFO12404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:32 Download gff for
UFO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32040-RA | 300..1159 | 1..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:02 Download gff for
UFO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32040-RA | 300..1159 | 1..861 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:07 Download gff for
UFO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32040-RA | 300..1159 | 1..861 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:07 Download gff for
UFO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9354332..9354788 | 1..460 | 99 | -> | Plus |
| 3L | 9354850..9355252 | 461..861 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:02 Download gff for
UFO12404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9347432..9347888 | 1..460 | 99 | -> | Plus |
| arm_3L | 9347950..9348352 | 461..861 | 98 | | Plus |
