UFO12406.5prime Sequence
1068 bp (937 high quality bases) assembled on 2012-10-19
> UFO12406.5prime
AGTCGACATGTGGTGCGGTGCCTTGTCGATTGTGTGTCTGATATTCCTTT
TCGGAATATCCGAGGCCCGCAAAGGATTTGGTCCTGGCGAACAGGACTGG
GGTTATGTGGACGTCCGCGATGGGGCTCACATGTTCTACTGGCTATATTA
CACCACTGCGAATGTGAGCAGTTATACTGATCGACCGCTGGTTCTGTGGC
TCCAGGGCGGACCTGGTGGCTCCTCCACAGCCCTGGGAAATTTCCAGGAG
CTGGGACCTGTGGACACGAATGGTCAGCCGCGAGACGGAAACTGGGTACA
GTACGTCAACGTGCTGTTCATTGACAATCCCGTGGGATCGGGGTTTAGCT
ATGCGGATAACACCAGTCTGCTGGTTACCAACAATGAGGAGCTCATCGAC
GATCTGATTAGCTTCATGCTGCACTTCTATAAATTGCACAAAGAGTTCAA
GAACGTCCCACTCCACATATTCTCGGAGAGTTATGGTGGTAAAATGGCCC
CCGCCCTGGCCATTCGACTGGCTAAAGCCATGAGCGCCGGTGAGTTGGCG
CATCCGGGAACTCTTAAGTCAGTGACTATCGGCAATCCTTGGATATCAAC
TCGGCACATCAGCCGCGAGCACTCCAAGTATTTGTTCGTCAATGGTTTGA
TCGACGAGGATGGGGTAGCCCTACTCGATGCCCAGGAGGAACGAATCTTA
AGTGCTCTCAAGAAACACGAGTTTGATAACGCCACTGATGAGTACTTGAG
GTGGTATGAACTCATGCAGCAACTGACTGGTGAGATCTACCTTTACAATA
CACAGACCCACGTGGATCCTTCAGAGGATAGAACCTACGGCTATGGAGAG
ATTTATCCGCTTCATAGAGCGAAATGTCAGTGAGCCCTGCAGATCAATGG
TACTGTCTATGCGTCACAGGTTATGGGAGTGTTGTCCAGCTTCCACGAGA
TCGCCTGAAATCGGAAATTATACATTCCCGCGCTGCTGATTGAGACCTCT
GTTAAGTAATATTTATTCTGCAGTTGGGAACTTAGTGCGAACCACAGTCC
ATTTGCCTTGATCATGAC
UFO12406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31821-RB | 1423 | CG31821-RB | 34..1102 | 8..1064 | 4845 | 97.6 | Plus |
| CG31821-RA | 1373 | CG31821-RA | 34..1102 | 8..1064 | 4845 | 97.6 | Plus |
| CG3344-RA | 1480 | CG3344-RA | 160..317 | 68..225 | 235 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15901411..15902377 | 970..8 | 4595 | 99.1 | Minus |
| 3L | 28110227 | 3L | 687213..687370 | 225..68 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:44 has no hits.
UFO12406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:33 Download gff for
UFO12406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 1..1042 | 8..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:03 Download gff for
UFO12406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 9..1058 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:09 Download gff for
UFO12406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31821-RA | 26..1075 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:09 Download gff for
UFO12406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15901405..15902380 | 1..975 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:03 Download gff for
UFO12406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15901405..15902380 | 1..975 | 98 | | Minus |
