UFO12407.5prime Sequence
1085 bp (982 high quality bases) assembled on 2012-10-19
> UFO12407.5prime
AGTCGACATGGAACCTGCTAAAGTGATTGGAAAGCTAAAGGAGCAAGTGC
GCATGGAGCACAATTCGCGTCGTAGTTTTCCAAAAGCTTGGAGCGAAATT
TCGGGCAAGCAAACTAACAAGTTCTACCACCAATCTGAGATTAATTCTCA
ACTAAGTAACCAGCTAAAATTAAAAGACCTGTGCCCTTTTGTGCACAACA
ACCAAGGCGAATCGCGATTCGTATCTCCGGAGATGTACAAACCTTTACTG
GCCGTCTGTCGCTGTGGGCGAACTAAGGAAAGCATCCATATGGGAAAATG
CTTACAAAGAGCCTTGAGTCCAGATTACAAGCAAGAAATGGTACAGAATG
GCACTGATGCATGGAGTGCAGAACCATTTAATGTGCCTTCCACTTCAAGC
TCTACCATTGGCTTCGCAGCTATTTCGAAAAACTACCAAAAGCTGGAGCG
TTCTATGCAATATGTTTCTCCTGCGTTTTCCATGCCTGGCCCTCGAATTA
CAGCAGTCCCTTACTATAATATTATTATTGGAGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATAT
TTGCCCATGGTGAAACGGGGGCGAGAGTTGTCATATGGCACGTTTAATCA
AACTGGTGAACTCACCAGGGATGCTGAACGAAACTATTCTCATAAATCCT
TAAGGATTAGCAGTTTCACGTAACCGCCCCATCTGGCAATATTGTGTAGA
CTGGCGGATTCGCTTGTATTCACTCGAGCGATGTA
UFO12407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34453-RB | 705 | CG34453-RB | 1..525 | 8..532 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 232848..233074 | 401..175 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 233125..233264 | 176..37 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 232660..232790 | 532..402 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:47 has no hits.
UFO12407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:33 Download gff for
UFO12407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 8..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:05 Download gff for
UFO12407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 8..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:11 Download gff for
UFO12407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34453-RB | 1..529 | 8..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:11 Download gff for
UFO12407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 232660..232790 | 402..532 | 100 | <- | Minus |
| 3L | 232848..233072 | 177..401 | 100 | <- | Minus |
| 3L | 233125..233264 | 37..176 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:05 Download gff for
UFO12407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 232660..232790 | 402..532 | 100 | <- | Minus |
| arm_3L | 232848..233072 | 177..401 | 100 | <- | Minus |
| arm_3L | 233125..233264 | 37..176 | 100 | <- | Minus |
