UFO12408.5prime Sequence
1074 bp (961 high quality bases) assembled on 2012-10-19
> UFO12408.5prime
AGTCGACATGGATGACTCGTTTTTCGGCTTTGACACGAATCTACCGGACG
AAGATGGTGGCGATGGACGCATCGTCGAGGCGGAATACGATGCCCTCAAT
GACGAAACCTTTGGATCCGCTATAAATGGCGACTGGGAGGAAGCCCATGA
GACGATGGTACGCCTGGGCGGGAATGGCGAAAGGGTGCGGAAGCGACCCG
CGGAATCTAGTGGAAATACGGATTTTGCCGATCAGGGAAATGGTGCCTTC
CTGCGACACGCTAATCCGCTATCATCGGCGCCCTCTTCAAGCGGCTCCAC
TCCGGCCCCTTTGAATGCCCCCTTCCGACAGTCTCGTCACATAGGGGACT
CGGACTTGGAGCTAAACATTTCCTCCATGAAGTTGGACGACATGGACCTG
TCCTCTTTCACCACTGATAGCGAAGCCGGTGGGCTGAGCAACCGCATTAA
GCTGGACTCCGGGGTCTGGGGATCACAGCCGTTTCCCAACAACCAACATT
TGTTCCGCGAGCCTATGCGCAGCGCCTTCAAGCCACAGCAGCAGCAACAT
CAGCAGCACCAACCACAACAAATGAAGCCACCGCAGGAAGCGAATGCCAA
CTTTGCACTGAATCCACAGCCTTTTCCAAAAATTACAACTCTCGAGGATA
TAGAGCGCAATATGATCATTCAGCAGGCCATTCCGAAACAACAGCAGCAG
AGCCAGCAACAGGCGGAACGCAAAATGTTTGATGATTTTAGTCTGGGTAA
CAGGCAGCAGTGCCTACACCAACCATGTTGCAGCAACAGATGTTGCAGCA
GCAGCATCATCAGAAACAACAGTCGCAGCAGCAGCCGCCACACAAGCGCA
GCACAAGGTACCCCCTGGCTTCTTGGGCACGCCGCACACTCTCACGAGCA
AATTTGGGTTTCCCGGACCCGAGCTACTGCCACGCATCGTCGCAGCACAC
TAAACGGTATTGTGCACGATGCCGGCCGGATTATTACCGCAGTCTGCCCG
AATATCGCATGCCAGCATCTCTTATGACAGACATGCGACACTTTCCATGC
GGGGACAGGACCCTAACCAATCAA
UFO12408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patr-1-RB | 4285 | CG5208-RB | 82..1053 | 3..962 | 4555 | 98.7 | Plus |
| Patr-1-RA | 3532 | CG5208-RA | 82..1053 | 3..962 | 4555 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17043858..17044672 | 46..858 | 3975 | 99.8 | Plus |
| 3R | 32079331 | 3R | 17043645..17043689 | 3..47 | 210 | 97.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2964 | 536..864 | 211 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6899 | 671..847 | 211 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6855 | 755..853 | 211 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2682 | 531..847 | 198 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6925 | 657..849 | 188 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2659 | 519..853 | 187 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6849 | 519..588 | 167 | 72.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 946..1042 | 502..600 | 166 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6902 | 527..724 | 163 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6834 | 519..594 | 161 | 69.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1119..1179 | 531..589 | 147 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6872 | 531..601 | 143 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2980 | 519..711 | 142 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6879 | 519..588 | 142 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2627 | 515..712 | 141 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6808 | 519..589 | 136 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2815 | 539..853 | 135 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6945 | 657..836 | 133 | 54.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1255 | 519..675 | 133 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..3004 | 520..717 | 131 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2474 | 530..571 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6828..6901 | 515..589 | 129 | 65.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3264..3360 | 506..600 | 128 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1135 | 519..589 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6900 | 531..711 | 125 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1510..1594 | 512..594 | 123 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6981..7042 | 534..595 | 121 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1117..1177 | 519..577 | 120 | 68.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8391..8460 | 670..735 | 116 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2874 | 519..566 | 110 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1600 | 519..581 | 109 | 68.3 | Plus |
UFO12408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:34 Download gff for
UFO12408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 77..1049 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:07 Download gff for
UFO12408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 81..1053 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:13 Download gff for
UFO12408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patr-1-RA | 81..1053 | 1..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:13 Download gff for
UFO12408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17043644..17043688 | 1..46 | 95 | -> | Plus |
| 3R | 17043859..17044672 | 47..858 | 99 | -> | Plus |
| 3R | 17044903..17045016 | 859..962 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:07 Download gff for
UFO12408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12869366..12869410 | 1..46 | 95 | -> | Plus |
| arm_3R | 12869581..12870394 | 47..858 | 99 | -> | Plus |
| arm_3R | 12870625..12870738 | 859..962 | 91 | | Plus |
