UFO12409.5prime Sequence
1068 bp (970 high quality bases) assembled on 2012-10-19
> UFO12409.5prime
AGTCGACATGTTGGCAAATGAAACGAACAAGCTGCTGCTTTCCTCGCAGC
AGGAAAAACCAAATCACTACACCTACCTGAAGGAGTTCCGCGTGGAGCAG
TGCCAGTCGTTTTTACAGCACAAGTGCAACCAGCATCGCCCCTTCGTCTG
TTTCAATTGGCATTTTCAAAACCAGCGTCGGCGTCGTCCAGTGCGAAAAC
GCGATGGCACCTTCAACTACAGTGCGGATAACTATTGCACCAAATACGAC
GAGACCACTGGGATTTGTCCCGAGGGCGACGAATGCCCCTACTTACACCG
CACTGCTGGCGACACCGAAAGGCGATACCATCTGCGCTACTACAAGACAT
GCATGTGCGTCCACGACACCGACAGCCGAGGATACTGCGTCAAGAATGGA
CTACACTGCGCCTTCGCCCACGGCATGCAGGACCAGCGCCCACCGGTTTA
TGACATCAAAGAGCTGGAGACCCTGCAGAACGCAGAGAGCACACTGGACA
GCACTAATGCTTTGAATGCCCTGGACAAGGAGCGCAATTTGATGAACGAG
GATCCCAAGTGGCAGGACACCAACTACGTGCTGGCCAATTACAAGACAGA
GCCCTGCAAGCGCCCACCGCGCCTGTGCCGCCAAGGATACGCTTGTCCAC
AGTACCACAATAGCAAGGACAAACGTCGCTCGCCCAGAAAATACAAGTAC
AGGTCCACTCCTTGCCCCAATGTCAAGCACGGCGAGGAATGGGGAGAACC
GGGCAACTGCGAGGCCGGCGATAACTGCCAGTACTGCCACACACGCACCG
AGCAGCAGTTCCACCCGGAGATCTACAAGTCGACCAAGTGCACGATGTCC
AGCAGCCGGATACTGTCCGCGCAGCGTCTCTGCGCCTTTGCCCATGTGAC
CTTGCTCAATGACGATCCGCGCGAGACTCATGTCGGCGAGTCTGGCAATA
CTAGCTTATAACACGTCCTCGCGCATACATCTATACGACTCTAGTACTCA
ATACCGATTAACTCAGGTAGGCTTGCGTCACATTCAGGCAGCTCGCTCAC
TTACGTCCACAACCATGC
UFO12409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unk-RE | 5518 | CG4620-RE | 20..1110 | 8..1068 | 4665 | 96.7 | Plus |
| unk-RC | 3667 | CG4620-RC | 20..1110 | 8..1068 | 4665 | 96.7 | Plus |
| unk-RB | 2717 | CG4620-RB | 20..1110 | 8..1068 | 4665 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23156072..23156493 | 704..283 | 2110 | 100 | Minus |
| 3R | 32079331 | 3R | 23157501..23157710 | 282..73 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 23155813..23156013 | 898..701 | 855 | 98.5 | Minus |
| 3R | 32079331 | 3R | 23157779..23157843 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:16:57 has no hits.
UFO12409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:35 Download gff for
UFO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 21..974 | 1..946 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:09 Download gff for
UFO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 13..966 | 1..946 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:15 Download gff for
UFO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unk-RB | 13..966 | 1..946 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:15 Download gff for
UFO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23155809..23156011 | 703..900 | 97 | <- | Minus |
| 3R | 23156074..23156493 | 283..702 | 100 | <- | Minus |
| 3R | 23157501..23157710 | 73..282 | 100 | <- | Minus |
| 3R | 23157779..23157846 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:09 Download gff for
UFO12409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18981531..18981733 | 703..900 | 97 | <- | Minus |
| arm_3R | 18981796..18982215 | 283..702 | 100 | <- | Minus |
| arm_3R | 18983223..18983432 | 73..282 | 100 | <- | Minus |
| arm_3R | 18983501..18983568 | 1..72 | 94 | | Minus |
