UFO12411.5prime Sequence
1034 bp (918 high quality bases) assembled on 2012-10-19
> UFO12411.5prime
AGTCGACATGGTTGCCAAGATTCTGCTGAGCCTGCTGCTCCTCGCTGTTG
TCACCGATCTGGTCTCAGCCCAGTGCTCCCAAAACCTGTGCCCAGTGGTC
ACGAACTCGAATCCCCGGTGCAAGGGAAAACTTCAGTATCAATGCGTTTG
CGACTACACCTGCTCCGAGTGGGACAAGCCCTGCAACTGGGTACTTACAT
GTCCTGAAGAAATCGACGACATCAATGAAGTGCGCGACAAGAGAAATAAG
CTAAATTTGTTCAGATTGCCCAATCGAAACCGCCTGGAGTGCCTGGACAT
CAATGTCTACACCATTACGCGTCCGAATTGCTGCGACTTGTTCTGCAAGT
CTAAGCTTAAAATGTCTGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAT
AACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATTCTTG
CGATATATGTTGTAGAACTGCCGGAATCGTCGTGTATCACTCAGAGCGAT
GAAACGGTTCAGTTGCTCATGGAAACGGTGTACAAGGTGACACTATCCCA
TATTCACCAGCTCACCGTCTTCATTTGCATACGA
UFO12411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15404-RB | 468 | CG15404-RB | 16..386 | 3..372 | 1815 | 99.5 | Plus |
| CG15404-RA | 406 | CG15404-RA | 16..386 | 3..372 | 1815 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3173987..3174238 | 3..254 | 1245 | 99.6 | Plus |
| 2L | 23513712 | 2L | 3174304..3174422 | 255..372 | 545 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:16:28 has no hits.
UFO12411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:29 Download gff for
UFO12411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15404-RA | 1..372 | 5..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:54 Download gff for
UFO12411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15404-RA | 1..372 | 5..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:00 Download gff for
UFO12411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15404-RA | 14..389 | 1..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:00 Download gff for
UFO12411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3173985..3174238 | 1..254 | 98 | -> | Plus |
| 2L | 3174304..3174410 | 255..361 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:54 Download gff for
UFO12411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3173985..3174238 | 1..254 | 98 | -> | Plus |
| arm_2L | 3174304..3174410 | 255..361 | 100 | == | Plus |
