UFO12416.5prime Sequence
966 bp (872 high quality bases) assembled on 2012-10-19
> UFO12416.5prime
AGTCGACATGTTGCTAAGATCATTTCATTATATTCTGCTGAACTGGATTT
TATTATTCCTATTCACAGTTTGCAAAGCAAAGAAAGCCGAAAATGATGTA
GTACAGGAAGTAATATACTCAAATTCCATTCGAGCCCTGTCTGAACTTCG
CGAGATTGAGAATTCCTATATGGAGCATTTAAACAACTATGTTAGCTTTC
TGCAACAAAAAATCAAAACTCTCAGAATTTTTATTAATTCTTTAACTCCG
AATTATTTGGATCACAAGGTGGATCGATATAAATATGTGTCCAATCCCCT
AAATTCCTTTGGACTTTTAAGGCGGGCTCATCAAGATTGGCCCAAGTTGA
TTGCTTACTTAAAGGATCAAGGAAATATAAAAGTTGACATCGAGGAAATG
AATAAGCTAATCAATCGTACACCCCACGCAAATGATATGGAAGAGGCCCT
AATGGGAATGGATAGAATAGAACACTTCTACGACCTGAAGTCATCGGATA
TGGCCCAGGGTCTTGTGGCAGGTCAACAGCTAAGTTCGCGAATGTCAGCT
TCCGACTGCTTGGCTTTAGCAGACTATATGTACAAACGATCAGAATTTAG
ACGTGCGGCTGAATGGTATCGAATAGCTTTAAGTGTCTTCACCAAACCAA
AAAATAATATTGCATTTAAGTTCTATGCTCCAAAACGAAAAGAGCTCGAA
AAATGTTTGTCATAAGTCGGCTTCAGAAGGTTCCGTTGAAAACTTAACTG
ACTGTCTGAGGACTTTCTCAGACCCGACAATTCATGTGCATCTAGCCAAG
AATCGCCCACTATGATGAACAGGCTGCAGGAAAGTTCCACCAGACTCACT
AGTGTGTCGCTATAATAGCACACCACTCATTTATGCGATAGCTCCTCTAA
GAGAGAAATCAGCGGACCCCTTATTGTTAATCCGACTGATCTTGACGGAA
TAGCCATGGACATGAC
UFO12416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34345-RA | 1777 | CG34345-RA | 12..927 | 8..900 | 4035 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6623123..6623343 | 8..228 | 1105 | 100 | Plus |
| 2L | 23513712 | 2L | 6623883..6624076 | 533..725 | 920 | 99.5 | Plus |
| 2L | 23513712 | 2L | 6623404..6623558 | 229..383 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 6623679..6623831 | 382..534 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:12 has no hits.
UFO12416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:39 Download gff for
UFO12416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 1..933 | 8..913 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:17 Download gff for
UFO12416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 6..944 | 1..913 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:23 Download gff for
UFO12416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34345-RA | 6..944 | 1..913 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:23 Download gff for
UFO12416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6623117..6623343 | 1..228 | 98 | -> | Plus |
| 2L | 6623404..6623558 | 229..383 | 100 | -> | Plus |
| 2L | 6623681..6623831 | 384..534 | 100 | -> | Plus |
| 2L | 6623885..6624081 | 535..729 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:17 Download gff for
UFO12416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6623117..6623343 | 1..228 | 98 | -> | Plus |
| arm_2L | 6623404..6623558 | 229..383 | 100 | -> | Plus |
| arm_2L | 6623681..6623831 | 384..534 | 100 | -> | Plus |
| arm_2L | 6623885..6624081 | 535..729 | 98 | -> | Plus |
