UFO12418.5prime Sequence
1060 bp (960 high quality bases) assembled on 2012-10-19
> UFO12418.5prime
AGTCGACATGCAGCGCCTGACGAAATCGTTACGTTCACTTCCATTTCCCG
CGGGAAAGATCCTGCGAACCCAATTGGTGGTCAGAAGGGAGTACTCCTCG
GAAATACCGGATCCCGTTGAACTAAGCTTCGATTCGTACACCGGCGAGAA
TCCAGAGACGAGTCCACCACTGCTCACATATCATGGACTCTTTGGTTCCA
AGCAAAATTGGCGAGGAATTAGCAAGGCTCTGGTGCGAAAAGTTTCCCGA
AAGGTGTACGCCATCGATGTGAGGAATCATGGCGAGAGTCCACATTCGAG
TGTCCACAATTCCAAAGCGATGAGCGAGGATTTGCGTTTGTTTATGGAGC
AGCGCAGTCATCCGAATGCCGCCTGCATGGGTCACAGCATGGGCGGCAGG
TCCATGATGTACTTCGCTCGAAAATATCCCGAGTTGGTGGAACGTTTGAT
AGTGGTGGACATATCGCCAATTAGCGTGCCCCGTTCCACGGGCGAGATGA
CGGAAATTTTCGACGCGATGGTCTCCCTGGACCTTTCGCCAAGCATGTCC
ATGTCTGAGGGCAGGAAAATTGCACGGGAAAAACTACTGAAAGCCACCGA
AGACGAGACCGTTGACTTTATCATGCTGAATCTCCGAAAAAATCCTGACA
CCGGCGCTTTCTCTTGGGCCTGCAATGCCCATGTTCTTCGTGAATTCCTC
ACCCGCTTCGACAAATATCAGAGTAATTTGGAGGAACTGCCGCCGTACAC
GGGACCCACTACGTTCATTTGCGGCACGCGATCACCTTACATGAGACGCG
AGCAATGGCCACAGATACAGAAATGTTTCCCAATTCTGAGATCCACTGGC
TGGATGCCGGACATTTAGTGCACTTTGAAAGCCGCAGGAGTTTCTAACAT
AGTCAGCGAGTCCTGATAGACTGAGCAGCTTTCTAGACCATCGTTGGCGC
CGCGGGCCCAGTAGTGGTCATAATCATTATCATATTCATATCATAATTAC
CACTAGCCTAGGGAATCTGTCATGACTATGCTGGATTCCCCCAATAAAAC
GCCCGCGCCA
UFO12418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2059-RB | 1141 | CG2059-RB | 147..1070 | 8..925 | 4470 | 99.4 | Plus |
| CG2059-RA | 1197 | CG2059-RA | 203..1126 | 8..925 | 4470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7286853..7287101 | 8..256 | 1245 | 100 | Plus |
| X | 23542271 | X | 7287407..7287640 | 424..657 | 1155 | 99.6 | Plus |
| X | 23542271 | X | 7287170..7287345 | 252..427 | 880 | 100 | Plus |
| X | 23542271 | X | 7287709..7287846 | 658..795 | 690 | 100 | Plus |
| X | 23542271 | X | 7287909..7288029 | 794..911 | 455 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:18 has no hits.
UFO12418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:40 Download gff for
UFO12418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RB | 142..1073 | 1..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:22 Download gff for
UFO12418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 198..1129 | 1..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:27 Download gff for
UFO12418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 198..1129 | 1..928 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:27 Download gff for
UFO12418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7286848..7287098 | 1..253 | 98 | -> | Plus |
| X | 7287172..7287345 | 254..427 | 100 | -> | Plus |
| X | 7287411..7287640 | 428..657 | 100 | -> | Plus |
| X | 7287709..7287846 | 658..795 | 100 | -> | Plus |
| X | 7287911..7288016 | 796..899 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:22 Download gff for
UFO12418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7180881..7181131 | 1..253 | 98 | -> | Plus |
| arm_X | 7181205..7181378 | 254..427 | 100 | -> | Plus |
| arm_X | 7181444..7181673 | 428..657 | 100 | -> | Plus |
| arm_X | 7181742..7181879 | 658..795 | 100 | -> | Plus |
| arm_X | 7181944..7182049 | 796..899 | 98 | == | Plus |
