UFO12419.5prime Sequence
1018 bp (926 high quality bases) assembled on 2012-10-19
> UFO12419.5prime
AGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACTG
TCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCGC
AAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCCT
GGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAGA
CCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGGC
AAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCTA
TGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAGG
CCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATCAAGACCATT
GCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGAA
GGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAGG
GCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGAT
GCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGTC
CACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAGA
TCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAAGCCATC
AAGCGGGAGTTTAGCGGCTCCGTGGAGAAAGGGTTTCCTGTCCATCGTCA
AGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGTCTGCACGACTCA
ATGGCCGGCATGGCACCAAAGGACAGACGCTGATCCGCATCATTGTCAGC
CGGTCGGAGATCGATCTGGGTGACATCAAGGAGCATTCCAGAACAAGTAC
GCAGAGCTTGAGTCTGATCAGGGCGATACATCGCGATTATAGCCGTGCCC
TATTGCTATGTGCTCGCAGCTTTTAGACATCGTTGCGCGCGGGCCCAGGT
AAGTGCCATAACTGTAAT
UFO12419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RF | 1457 | CG5730-RF | 95..1051 | 8..955 | 4405 | 98.1 | Plus |
| AnxB9-RE | 1456 | CG5730-RE | 94..1050 | 8..955 | 4405 | 98.1 | Plus |
| AnxB9-RC | 1432 | CG5730-RC | 70..1026 | 8..955 | 4405 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 36..747 | 3480 | 99.6 | Plus |
| 3R | 32079331 | 3R | 21068837..21068993 | 747..901 | 610 | 95.5 | Plus |
| X | 23542271 | X | 16418705..16418779 | 382..308 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:21 has no hits.
UFO12419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:41 Download gff for
UFO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnnIX-RC | 75..1050 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:24 Download gff for
UFO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 63..1038 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:30 Download gff for
UFO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 63..1038 | 1..967 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:30 Download gff for
UFO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067463..21067499 | 1..37 | 91 | -> | Plus |
| 3R | 21068069..21068777 | 38..747 | 99 | -> | Plus |
| 3R | 21068838..21069019 | 748..921 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:24 Download gff for
UFO12419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893185..16893221 | 1..37 | 91 | -> | Plus |
| arm_3R | 16893791..16894499 | 38..747 | 99 | -> | Plus |
| arm_3R | 16894560..16894741 | 748..921 | 93 | -> | Plus |
