UFO12421.5prime Sequence
1004 bp (792 high quality bases) assembled on 2012-10-19
> UFO12421.5prime
AGTCGACATGATAGCTCTGAGTGCGCTGCTAACCAAATATACGATCGGTA
TTATGAGCAACCTAATCAATGGCAACAGCAACAACAACAACCAGCAGCAG
CTTCAACAACAACAGGGTCAGAACCCACAACAACCAGCTCAGAATGAAGG
CGGAGCGGGAGCGGAGTTCGTGGCGCCACCGCCCGGACTAGGTGCCGCAG
TGGGCGTGGCAGCCATGCAGCAGCGCAACCGCCTGCTGCAGCAGCAACAG
CATCAGCACCACCACCATCAGAATCCCGCCGCCGAGGGAAGTGGCCTGGA
GCGGGGCAGCTGCCTTCTGCGCTACGCCAGCCAGAACTCCCTGGACGAGA
GCTCCCAGAAGCACGTCCAGCGGCCAAATGGCAAGGATCGCGGCACTGTG
GGGCAGTACAGCAATGAACAGCATACGGCGCGCTCCTTCGACGCCATGAA
CGAGATGAGAAAACAAAAACAGCTCTGTGATGTGATATTGGTGGCCGACG
ATGTGGAGATCCACGCTCACCGCATGGTGCTGGCCTCCTGCAGTCCGTAC
TTCTATGCGATGTTCACCAGTTTCGAGGAGTCGCGGCAGGCGAGGATCAC
CCTCCAGAGTGTCGATGCTCGGGCCTTGGAGCTGCTCATCGACTACGTAT
ACACTGCCACTGTGGAGGTAAACGAGGATAACGTGCAAGTCCTCTTGACC
GCCGCCAACCTGCTCCAGCTCACGGATGTGCGAGATGCCTGCTGCGACTT
CCTGCAAACTCAGTTGGATGCCAGTAATTGCCTCGGCATCCGTGAGTTTG
CCGATATTCATGCCTGCGTGCACCTTCTCAATTACGCAGAGACCTACATC
GAGCAGCATTTCAACGAGTGATCCAGTTCGATGAGTGTCTGAACCTCTCG
CACGAGCAGTCATCATTCCTGATTGGCAACGTTCTGTATTTCGTTCAAAT
GAGGAGCTGCGTAATACGATGCGTCATCGCTGCTTGCGCTACGATGTTTC
CTAT
UFO12421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kel-RB | 5476 | CG7210-RB | 153..1150 | 8..1004 | 4485 | 97.2 | Plus |
| kel-RA | 5476 | CG7210-RA | 153..1150 | 8..1004 | 4485 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18137477..18137931 | 462..8 | 2185 | 98.7 | Minus |
| 2L | 23513712 | 2L | 18135574..18135975 | 864..463 | 1950 | 99 | Minus |
| 2L | 23513712 | 2L | 18134781..18134822 | 909..868 | 195 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 18:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2536 | 43..276 | 237 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6931 | 55..289 | 212 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2674 | 58..276 | 187 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2476 | 94..270 | 177 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2800 | 72..270 | 163 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6794 | 209..275 | 146 | 73.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1142 | 195..275 | 146 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2404 | 217..270 | 144 | 74.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6815 | 218..275 | 144 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6836 | 218..275 | 144 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2394 | 209..275 | 139 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6869 | 209..275 | 139 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2415 | 217..275 | 133 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6857 | 217..275 | 133 | 69.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1125 | 209..270 | 132 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1158 | 195..270 | 130 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1339..1570 | 35..270 | 123 | 54.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7939..7998 | 214..273 | 120 | 66.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9383..9442 | 214..273 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2270..2361 | 187..275 | 119 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6773 | 236..275 | 119 | 77.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1595 | 218..273 | 111 | 68.4 | Plus |
UFO12421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:42 Download gff for
UFO12421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RB | 274..1277 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:27 Download gff for
UFO12421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 147..1150 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:31 Download gff for
UFO12421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 147..1150 | 1..1004 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:31 Download gff for
UFO12421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18135574..18135975 | 463..864 | 99 | <- | Minus |
| 2L | 18137477..18137935 | 1..462 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:27 Download gff for
UFO12421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18135574..18135975 | 463..864 | 99 | <- | Minus |
| arm_2L | 18137477..18137935 | 1..462 | 97 | | Minus |
