UFO12422.5prime Sequence
1056 bp (922 high quality bases) assembled on 2012-10-19
> UFO12422.5prime
AGTCGACATGTCCAAGCGCAACATAACGTACGTAAAGCCGCAAGAACCTA
GTTTTCTGGCCAAGTTGAAGGCTGAAATTGGCTACAAGGAGGGACCCACC
GTAGAGACCAAGCGTCAGCGATTGGATCCGCAGGACCAGGAGGACTACGA
TTCTGAGGAAGATTCACGGGAGGACGAACAGCCGCAGGTGGTCGTCCTTA
GGCCGGGAGATCTATCCGCCGAAGAGGCCAAAACGGAGAAACTGTTGGCC
TCCAAAGAATTAGCCGAAAAGCGAGCGGATCTGACGCAGCCAATAGTCTT
CAAACACTGTGTCAAGCAGCCCAACATCGAGAAAAAAGAGTCCCAATCTG
AAACCAACAAGAAGTCCGAAAAATCCAGCACATCCAAGAGCAAGAAGTCC
AAGGCCGCCAGTAGTAAGCTGTCCTTCAACGAGGACGAGGAGGACGAGAC
TGCCGAGGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTTGTAAATTCATTAAGCATTCT
GCCGACATGGAAGCCATCACAAACGGGCATGATGAACCTGATTTCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTTGAAA
ACGGGGGCGAAGAGTTGTCCATACTGGTCCACGTTTAAATCAAAACTGGT
GAAACTCACCCAGGGATTGCTGAAACGAAAAACTAATCCTCATAAACCCT
TTAGGGAAATAGCCAGGTTTTCCACCGACACAGCCACATCTTGCAATAAT
GGTGTAGAACCTGCCGGAATCCGCTCTTAATCACTCAGAGCGAATGAAAA
ACGTTC
UFO12422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42245-RA | 5111 | CG42245-RA | 98..550 | 8..460 | 2265 | 100 | Plus |
| MEP-1-RC | 5111 | CG1244-RC | 98..550 | 8..460 | 2265 | 100 | Plus |
| MEP-1-RG | 5171 | CG1244-RG | 261..610 | 111..460 | 1750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2633536..2633740 | 256..460 | 1025 | 100 | Plus |
| 3L | 28110227 | 3L | 2631975..2632121 | 111..257 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 2631812..2631916 | 8..112 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:00 has no hits.
UFO12422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:36 Download gff for
UFO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42245-RA | 86..550 | 1..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:10 Download gff for
UFO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42245-RA | 91..555 | 1..465 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:17 Download gff for
UFO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MEP-1-RC | 91..555 | 1..465 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:17 Download gff for
UFO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2631805..2631916 | 1..112 | 97 | -> | Plus |
| 3L | 2631977..2632121 | 113..257 | 100 | -> | Plus |
| 3L | 2633538..2633740 | 258..460 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:10 Download gff for
UFO12422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2631805..2631916 | 1..112 | 97 | -> | Plus |
| arm_3L | 2631977..2632121 | 113..257 | 100 | -> | Plus |
| arm_3L | 2633538..2633740 | 258..460 | 100 | == | Plus |
