UFO12423.5prime Sequence
1074 bp (966 high quality bases) assembled on 2012-10-19
> UFO12423.5prime
AGTCGACATGGCAACCTCTTCGCACCTCAATTGGTTGATCATTCGCAACA
ACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCACA
GAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAGCGGCATCGT
GCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTCA
CCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCCAAGAACACC
GTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAA
GAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACACAGGCTGCCC
TCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAG
GGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAAACATATTTCCTCATAAACCCTTTGAGGAAATAGCCAGGTTTTC
ACCGTACACGCCCACATTCTTGCGAATATATGTGTAGAACTGCGAATCGT
CCTGGTAATTCACTCGAGCGATGAAAACGTTCAGTGCTCATGGAACCGGG
TTACCAGGTGAACCTATCGAAATA
UFO12423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL28-RG | 851 | CG12740-RG | 346..777 | 8..439 | 2160 | 100 | Plus |
| RpL28-RF | 624 | CG12740-RF | 119..550 | 8..439 | 2160 | 100 | Plus |
| RpL28-RE | 650 | CG12740-RE | 145..576 | 8..439 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3221466..3221709 | 344..101 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 3221188..3221285 | 439..342 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 3221881..3221974 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:03 has no hits.
UFO12423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:36 Download gff for
UFO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RF | 112..556 | 1..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:12 Download gff for
UFO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RE | 138..582 | 1..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:19 Download gff for
UFO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RE | 138..582 | 1..446 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:19 Download gff for
UFO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3221188..3221283 | 344..439 | 100 | <- | Minus |
| 3L | 3221467..3221709 | 101..343 | 100 | <- | Minus |
| 3L | 3221882..3221979 | 1..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:12 Download gff for
UFO12423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3221188..3221283 | 344..439 | 100 | <- | Minus |
| arm_3L | 3221467..3221709 | 101..343 | 100 | <- | Minus |
| arm_3L | 3221882..3221979 | 1..100 | 97 | | Minus |
