UFO12424.5prime Sequence
1100 bp (982 high quality bases) assembled on 2012-10-19
> UFO12424.5prime
AGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCCGGACGCAGG
GATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCCAAAAGCGGT
CTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAAGCGGCTTCA
GATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAAAGATCCTCA
CGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATGGCTCGAGTT
GAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTCGCAAACTGC
TTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGGATCCCTACC
AGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTGAACGAGGCA
GCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTTCGACAGTAC
CTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGGTTCGCGATC
TGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAGTACGATTCA
GCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAAGAAGGCCGT
CCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCTGGAACGAGT
TGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTTCTTGATGCC
CGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTTCTTGCGCAA
GGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAAGGTTGATCTG
GTACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAGTGCCGATAT
CCTACTATTGCCTTCCATGCCTCCCTACACATCCTTTGGAAAGTGCGCTC
ATCATCTATCCCGTCAGTTGGGCAACTGCATTTGGACAAAAACAGATCAG
CGTGGGCTTCATGGGTATCCAAACGGTGGGTAATTCCTCTGTTATTATTC
CCTACGATTCAAAAGTTTGCAGTACACATGCGGGGAACCAAGTATGGCAG
TATAACGCTATGAACCATCTTCCTGAATCGAATGTCTGGCTGGAGTATCC
UFO12424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns2-RA | 2233 | CG6501-RA | 128..1246 | 7..1100 | 4705 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17567070..17567733 | 879..216 | 3225 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17568118..17568329 | 218..7 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 17566887..17566994 | 997..893 | 235 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:06 has no hits.
UFO12424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:37 Download gff for
UFO12424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ns2-RA | 111..1079 | 1..962 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:14 Download gff for
UFO12424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns2-RA | 122..1090 | 1..962 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:20 Download gff for
UFO12424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns2-RA | 122..1090 | 1..962 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:20 Download gff for
UFO12424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17566922..17566994 | 893..962 | 94 | <- | Minus |
| 2R | 17567053..17567731 | 218..892 | 99 | <- | Minus |
| 2R | 17568119..17568335 | 1..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:14 Download gff for
UFO12424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13454427..13454499 | 893..962 | 94 | <- | Minus |
| arm_2R | 13454558..13455236 | 218..892 | 99 | <- | Minus |
| arm_2R | 13455624..13455840 | 1..217 | 98 | | Minus |
