UFO12426.5prime Sequence
1073 bp (941 high quality bases) assembled on 2012-10-19
> UFO12426.5prime
AGTCGACATGAAGGAGTTCGACGATTTTAATTTTAGCGTTGAGAAATATA
CCAAGGACCTGACACGAGAATGTGTGGGTGGCAGCGATTTGCAGCAGCGA
AAAAAGGAAATCGAGGCCTACAACGAAACGACGGCAGCAACGCTCAAGCA
AACATGCAAAAAGAACTATATGGAGTTTATACAGACGGCCAAGGAGATAT
CACATCTCGAGTCGGAAATGTATCAACTGTCGCACATTCTGATTGAGCAG
CGCAATATTCTGGCCACCATGACGGATGGCAAGACTTCCAGTCACCTGAA
GGCAGAGAGTTTGGAGGCGGAGAGCACTACGGCGACGGAGGATCTGGAGA
ATAGCCATGCCACGCGGGCGGTCAAGGAAATGGTCCAGGGCTTCAATGGC
AATCTGGAAGGCAAGACCTTCCTCAACGAGGGAGCTCTAATCGAGTTGGA
CAGTAATGATTATCGACCCATTCAAAGGGTCTTCTTTTTCCTCTTCAACG
ATGTACTGATTGTCTGCAAAGTGAAGCATGATAAGCGCTTGGATTTCCTC
ACCGAGTACGACCCCAAGAAAATAGCCGTGATTAACATTAAGGACTTGGA
TGGCGTTAAGAATGCCATTAATATCATTACTCCAGATGGTTCCAAGATCT
ATCAAAGCATCACGGCTGCTGGGAAGACGGAGTGGATAGAGAAGCTCGAA
GAGGCCTTCCGCTTTGACCAGCAAAAGAAACCAAAAAGGGCCAGGCGCCA
CAGCCTCCACTCGGGCCAAACAGCAGTCAAAGCTTCGACTCCGGAGAACG
ATACCACACCCCAGAGTCCCGGGACAGCCCAAATCCCTGGAGGATGAGAC
GCCCGAGTGGCTAAGCACGGCCAGTGAAGAGATTCAGACCCTGTTGCCCA
ACGGCATTTTCGAGGATGCCAGGAGCTGATAAGCGAAACCAGGACTTCTT
GCGAAACGAGAACCGAAAGAAGTTGCCGCTAGCGACGCATTGACCCAAGT
GAAGCAGCAGACTGAAGCTGAATAATGTGCTTGCTCAGATGTCAACGTCC
AATCGCATTGCAAATCGCCTCTG
UFO12426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo84-RA | 2243 | CG6095-RA | 28..1067 | 7..1037 | 4720 | 97.8 | Plus |
| Exo84-RB | 2246 | CG6095-RB | 28..1070 | 7..1037 | 4680 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26051079..26051532 | 984..535 | 1805 | 97.1 | Minus |
| 3R | 32079331 | 3R | 26051586..26051917 | 535..204 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 26051974..26052129 | 203..48 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 26052190..26052230 | 47..7 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:43 has no hits.
UFO12426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:46 Download gff for
UFO12426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 19..1067 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:36 Download gff for
UFO12426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo84-RA | 19..1067 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:39 Download gff for
UFO12426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Exo84-RA | 19..1067 | 1..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:39 Download gff for
UFO12426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26052190..26052232 | 1..47 | 91 | | Minus |
| 3R | 26051079..26051532 | 535..984 | 97 | <- | Minus |
| 3R | 26051587..26051917 | 204..534 | 100 | <- | Minus |
| 3R | 26051974..26052129 | 48..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:36 Download gff for
UFO12426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21876801..21877254 | 535..984 | 97 | <- | Minus |
| arm_3R | 21877309..21877639 | 204..534 | 100 | <- | Minus |
| arm_3R | 21877696..21877851 | 48..203 | 100 | <- | Minus |
| arm_3R | 21877912..21877954 | 1..47 | 91 | | Minus |
