UFO12428.5prime Sequence
960 bp (839 high quality bases) assembled on 2012-10-19
> UFO12428.5prime
AGTCGACATGGACACGAGTGGCGGAAATTTGGATTCCCTAGACGACACGG
AACCATTGCCGGAGCTGAGTTTTGAAGACTTTTTGGAGCCAACGTCGGAG
AAGAGTTCCCAGCACATGGAAATCGAAGCTCTGGACTCAGAGGAAGACAA
TATCGGCGGTGAAGATCTGGCCGATCCGGCCAACGATTCCCTGAACACGC
CGCAGTTTAAGAAGAACGTGGTCCACATACTGGAGGACAAGAGGTTAAAC
TCGTCCGGACTAACCGTTTTGAAGTCGCACGCCATTAAGATGGTGACTGC
CGGAGGTACTCCTCCGGCCAAGGCGCAAGTTACAGACGTAAAGATACTAA
ACAAATTGAAACCAATACCCAGCAGTACGCTAAAGATCGGTAGCACGACC
ATAGCGACCAAATCCACACCGGGCAGCATAACCTAGACTTTGGGCAACTT
GACCCAGATTAGGACGAAAGATGGCCAAGTCATCTTTGTCCAGAAGTCTG
TTCCTGGAACACAAAGCAGCACTGCGGTGACAGGGTCACCAAGCGGTGGA
ATAAGACGCCTCGTGGCGCCTTCTGGTATCCAGAAGGCAGTGCTTTCTAA
GGGCGTGACCATGGCAAGCACGGGTCTGGTCAAGGCGGCTGTTCCTGCCA
AAGCAAGCACCTCGGTACCCGGCTCAGCCATAACCTTAAAGGGCATCCAA
CCGCTGGCCGGAGGCACTGCGAAGGCGTCGACTTCCAGCACGACGGCAAC
CACATCCCCATCTTTGGCACAGCCCAACAAAATTCAGTGTTGCGCACCTG
CCGATGGCAAAATTATTCAAGATCCATCAGCTGGTCCCTCCCTGCTGGTG
ACGCCAACAGGTACTGGGACCACAGTCCCACCAGAGTCTGCGCCACTCTG
TCAAACTATCTCCTCACGAAATGTGTGCTCAACAAGCCGTTGCAAGTATG
GTGGAAACAA
UFO12428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip120-RA | 3475 | CG6061-RA | 339..1283 | 7..938 | 4240 | 97.6 | Plus |
| mip120-RB | 3221 | CG6061-RB | 110..1029 | 32..938 | 4115 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13509788..13510643 | 32..884 | 3855 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:46 has no hits.
UFO12428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:47 Download gff for
UFO12428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 321..1290 | 1..953 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:38 Download gff for
UFO12428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 333..1302 | 1..953 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:41 Download gff for
UFO12428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip120-RA | 333..1302 | 1..953 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:41 Download gff for
UFO12428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13509789..13510726 | 33..953 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:38 Download gff for
UFO12428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9397294..9398231 | 33..953 | 97 | | Plus |
