UFO12429.5prime Sequence
934 bp (922 high quality bases) assembled on 2012-10-19
> UFO12429.5prime
AGTCGACATGCGCAATCTGAAGCTGCGATATTGCAAGGAGCTGAATGCAG
TGGCTCATCCCCAGCATCTACTTCTTCAACCTGAACTAAATGGCGGCGCC
TCGGACATATACTTCGTGGTGGCTGATAACAAGATCTACGCGGTTCAGGA
GTCCGGAGATGTACGACTAAAAGTCATTGCCGATTTGCCGGACATAGTGG
GAGTGGAGTTCTTACAGCTGGACAATGCGATCTGCGTGGCCAGTGGTGCT
GGTGAAGTGATCCTGGTCGACCCCCAAACAGGAGCTACCAGCGAGGGAAC
GTTCTGTGACGTGGGCATAGAGAGCATGGCATGGTCGCCTAATCAGGAAG
TGGTGGCCTTCGTTACCCGCACTCACAACGTGGTGTTGATGACCAGCACA
TTCGACGTTATAGCGGAGCAGCCACTGGACGCGGAACTAGACCCAGATCA
GCAGTTTGTCAATGTGGGATGGGGCAAGAAGGAGACGCAGTTCCACGGAT
CGGAGGGAAAGCAGGCTGCGAAGCAGAAAGAATCCGATTCTACATTCATC
CGCGATGAACAGGAATTAAATCAGGATGTAAGCATTTCCTGGCGAGGCGA
TGGTGAATTTTTTGTTGTGTCTTATGTGGCAGCCCAATTGGGTCGCACCT
TTAAGGTGTACGATAGCGAGGGAAAACTGAATCACACAGCCGAAAAGAGT
GCAATCTAAAAGATTCTGTTGTCTGGCGGCCTACGGGTAATTGGATTGCC
GTACCCCAGCAGTTTCCCAACAAGTCTACCATAGCCCTCTTTTGAGAAAA
ATGGCTTGCGACATCGGGAGCTGGTCCTTTCCCTTCGATCTCCAGGAGGA
GCCGGTGGTGCAGCTGCGCTGGAGCGAGGACTTCGACATACTGGCCATTA
GGACATGTGCCAAGAAGAGCAGAGAAGTGTACCT
UFO12429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp1-RB | 3921 | CG10535-RB | 38..963 | 8..934 | 4505 | 99.4 | Plus |
| Elp1-RA | 3918 | CG10535-RA | 38..963 | 8..934 | 4505 | 99.4 | Plus |
| Elp1-RC | 4312 | CG10535-RC | 38..975 | 8..934 | 4375 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11651008..11651575 | 8..575 | 2840 | 100 | Plus |
| 3R | 32079331 | 3R | 11651633..11651986 | 572..925 | 1565 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:49 has no hits.
UFO12429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:47 Download gff for
UFO12429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 21..946 | 8..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:40 Download gff for
UFO12429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 38..963 | 8..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:42 Download gff for
UFO12429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 38..963 | 8..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:42 Download gff for
UFO12429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11651008..11651574 | 8..574 | 100 | -> | Plus |
| 3R | 11651636..11651994 | 575..934 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:40 Download gff for
UFO12429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7476730..7477296 | 8..574 | 100 | -> | Plus |
| arm_3R | 7477358..7477716 | 575..934 | 98 | | Plus |
