UFO12431.5prime Sequence
1057 bp (943 high quality bases) assembled on 2012-10-19
> UFO12431.5prime
AGTCGACATGGTTTATTTCGGCGATCGGCAACGCGATCGCAATCGCGATC
GGAGTAATCAGAAAGTCGAGCGAATCATTCACGATGAAGAGTTTGGCGAG
GAGAACGTCGAGTTGGTGGACTCGGAGTGGGCGGACTTCGAGAAGTTCAT
TTGCCAGTTGCGCAAGCGGCGGAACAGTGCTATGTCCATGGAGGAGGAAC
TGCGTCACGTGCAGCGGCATCCGAAGATCAAGTCGCACGCCTTCTATCCG
TGCCCGCCGCCAGCTGAAAATGCTCGGGATTCGGACTCCTCGGACGATGA
TGATCCCATCGGATACATCGATACTCTTATGTATGGTCGCTATACCAAAG
ATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAGCTCAAAATACTCGAA
AAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAAGGAACTGCTGGGCAA
ACATTCGACCCGGGCGAAGCGGGTATCATCATGGATCTGGAGGCACACGG
TGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCCCTACTGGGCATCATT
ATGGCCCTGCTCTCGTTCATCATGGACAAGGGCATATCCATATGTACAAA
CGCGCGAATTTGGCTGTATCGCGATCTGACGTCACAGCCTTTTGTTCAGT
ACATCGCATGGGTCTCACTGCCGGTCTGTTTGATATTGTTCTCAGCCGGC
TTTGTCCATCTCATCGCACCGCAAAGTATAGGTTCTGGTATACCCGAAAT
GAAGACCATACTGCGCGGCGTTCAATTGAAAGAGTATCTCACATTTAAGA
CACTAGTGGCCCAAGGTAATTGGTTTAACGGCAACTCTGGGCAGCGGTAT
GCCATTAGAAAGGACGTCCTTTCGTACATATAGCAAGTATGTAGCACAAT
TATTAGTAAACTTGTCACCATCATCAGCATATATGAGATGAGTCGCGAAA
CTCTGAAATGTGGCGCAGGCTGTGCTGTCGTGTGGGGCGCTGTTTGCGCT
CAGTCGTGGGTGCTCTTCAGCATAAGTCACACCCACGTAACTCGCGTGCT
TACTACT
UFO12431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-RF | 3613 | CG31116-RF | 215..1283 | 8..1057 | 4650 | 97 | Plus |
| ClC-a-RD | 3994 | CG31116-RD | 215..1283 | 8..1057 | 4650 | 97 | Plus |
| ClC-a-RC | 3972 | CG31116-RC | 894..1642 | 328..1057 | 3050 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11806033..11806353 | 328..8 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 11802170..11802337 | 602..435 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 11801950..11802081 | 733..602 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 11801168..11801296 | 858..729 | 600 | 99.2 | Minus |
| 3R | 32079331 | 3R | 11802583..11802691 | 437..329 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:57 has no hits.
UFO12431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:49 Download gff for
UFO12431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RF | 206..1259 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:44 Download gff for
UFO12431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RD | 212..1265 | 1..1042 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:45 Download gff for
UFO12431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RD | 212..1265 | 1..1042 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:45 Download gff for
UFO12431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11801160..11801293 | 732..865 | 97 | <- | Minus |
| 3R | 11801952..11802080 | 603..731 | 100 | <- | Minus |
| 3R | 11802170..11802335 | 437..602 | 100 | <- | Minus |
| 3R | 11802584..11802691 | 329..436 | 100 | <- | Minus |
| 3R | 11806033..11806356 | 1..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:44 Download gff for
UFO12431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7626882..7627015 | 732..865 | 97 | <- | Minus |
| arm_3R | 7627674..7627802 | 603..731 | 100 | <- | Minus |
| arm_3R | 7627892..7628057 | 437..602 | 100 | <- | Minus |
| arm_3R | 7628306..7628413 | 329..436 | 100 | <- | Minus |
| arm_3R | 7631755..7632078 | 1..328 | 98 | | Minus |
