UFO12432.5prime Sequence
1094 bp (980 high quality bases) assembled on 2012-10-19
> UFO12432.5prime
AGTCGACATGCTGCACCTGACGGGCCAGAGTTACAATGCTCGCGACATCA
TCCGGAACATCTTCTCGCCGCTGATCGGCGTGCTGTCCAGTCCACAGGCG
GACGAGATTTGCCACCGGAACAACCTCTCCTTCGTGGAACTCCTGCAGCC
GTTCGCAAAGTTGCCAAATGATGCACACTTTCGCGACGTGTCCGGAACGA
GTGTATCGGTGCGTGGACTCCGTCTCAATTTCTGTGATGTGGACTGGCGG
CCGCCGCAAACAATTTTGGCCAGGAAGATGCTCAACGAGTCTGTGACCAA
CGCCCATAATGACAAAACCAGACTGGCCACCATAGCTGGCATAGACCTTG
AGTTACCCACATCGGAACCATGGTTCGAGCAGTGGCGTGAGACCTTTTTA
ACTGTGCAATTTCCGGCGGATCATGAGTTCACCCGCCATCTATTAAGTTG
TTTGCTAGTGCTATCCAGCGCAGATCCCCAGATCGTGGAGACGGCCCACA
AACTGGGACAACGTGTGCAGCAGATGCAGAGCATCACGCCCCAAAAACTG
CCCAAGTGGTTCCATCCCACCGAGGTCCTCAATAGTTACGTAGTGCTGCA
CGAGGCTAGCCAGGGAGACTTGTCCAAAGCACAGCAGGGATTCGAGCTGC
TCAAATCCACGTTCGGAGACAGCAAGTGTTTTTTGGTGTCGATCAACTCG
ATGGATTCTCAGGGTGCAGCTGAGGTTCCAGATCACTGGGCAACGTTTAT
TAAAAGACAGCCTAAAAGTGATCCAAATCTACCCTCCACTGATCTTAGTG
CACCGAAATCGCCACAGGAAGCGGTTTCTGTAATAAGTATGCCTGCTATG
CAAATGTCACAGCTCCTGAAGGAGTCAGTGCTCAAGATAGCGATCTGGCC
ATGCTTCATCCGCTGAGTCCCATGCAGAAAGCGCCACAGAGGCGATAATC
GAAATTTAGCATCAGCAGCGAGAGTATGCCTCCTCAACATCATCCAAATG
TTGGGGAAATGAATAAGCGGATGCACCTCAGGCGATGTCTTACAGTCGAG
AAAGTGGACACTACGACCTTGGTGCAGGACATGCGTTCAGCTTG
UFO12432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)76BDm-RB | 4347 | CG8793-RB | 77..1181 | 8..1093 | 4900 | 97.4 | Plus |
| l(3)76BDm-RA | 4094 | CG8793-RA | 77..1181 | 8..1093 | 4900 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19617119..19617770 | 977..330 | 3065 | 99.1 | Minus |
| 3L | 28110227 | 3L | 19618280..19618445 | 173..8 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 19617824..19617986 | 335..173 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:00 has no hits.
UFO12432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:50 Download gff for
UFO12432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 69..1135 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:46 Download gff for
UFO12432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 73..1139 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:47 Download gff for
UFO12432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 73..1139 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:47 Download gff for
UFO12432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19617030..19617764 | 336..1056 | 97 | <- | Minus |
| 3L | 19617824..19617985 | 174..335 | 100 | <- | Minus |
| 3L | 19618280..19618449 | 1..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:46 Download gff for
UFO12432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19611380..19611549 | 1..173 | 98 | | Minus |
| arm_3L | 19610130..19610864 | 336..1056 | 97 | <- | Minus |
| arm_3L | 19610924..19611085 | 174..335 | 100 | <- | Minus |
