UFO12434.5prime Sequence
1023 bp (934 high quality bases) assembled on 2012-10-19
> UFO12434.5prime
AGTCGACATGGACTTCGATCAGATCCTGGCCAAATGTGGCGACTTTAATC
GCTACCAGTTCATGATACTCGCCCTCTTCGGGTTCATTAATATCATCGTA
TCGATGCATTACTTTACGCAGACTGTCATTAGTTTTGTGCCAGATCACTG
GTGCTATCATGATAAGCTTGTGAATATGACATATAAGGAGATCGGTGAGA
TCTACGCTCAGTTCGAGAATCCCTCGTGCACCCGACTGGATGACATCAAT
GGCCACAATGTCACCGTTAGCAGCAAAGCCTGCGAGAAATGGATCTACAA
CTATGATTTCGGCTATAGAAGCATGAACACAGAGCTTAACTGGGTCTGCG
ACTCGGCGTACAAGGCACGTATTGGCCAGTCTCTGTTCTTTATTGGCTCC
GTGGTGGGCACACTTTTCTACGGTCTGCTTTCCGATAAGATTGGCCGTGT
TCCCGCCCTCATCTTGTCCAACTTCTGCGGCTTTGCCGGCGACTTCTCTA
CCATTTTCACCAAGAGCGTGGCCACTTTCACCCTCTGCCGTTTTATTTCC
GGCCTGGCAGCGGACACAAACTTCTACCTGATGTACATTATAGTTCTCGA
ATATATTCGACCCAGCATGAGAACCCTGGGTCTCAACATGGCCGTGGGTC
TGTTCTACTGCCTGGGCCTGGTTTTCACTCCTTGGCTGGCAGTTCTGGTG
GGTCACTGGCAGATCTACCTGGCCCTGCACGTCGCTGCCCATTCTGCTGG
TGGTGCTGTACTACTTTGTGGTGCAAGAGAGTGCCCAGTGGCTGGTCACC
AGGAATGACATCGACGGGCCATCGTAAGCTGAAGCGGGTGGCCAAGTTCA
TTGTTTGCCGGTGAGCCAGCGACTTCGACGAGTTCCGCGCATTGCTAATG
ACTCCACGAATGCTGGGTGGCGATGACAGAAGCAGCACTCTGCTGACATG
TTCAGACGCCCACGCATGCCCAGAAAAACTCATTCTGTTTTTTCAGAGCA
TGTGATCACTCCTGGTCTACTGA
UFO12434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6231-RF | 2730 | CG6231-RF | 357..1376 | 6..1011 | 4505 | 97.3 | Plus |
| CG6231-RE | 2720 | CG6231-RE | 347..1366 | 6..1011 | 4505 | 97.3 | Plus |
| CG6231-RA | 3096 | CG6231-RA | 723..1742 | 6..1011 | 4505 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19618475..19618735 | 593..333 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 19617864..19618254 | 969..590 | 1205 | 93.1 | Minus |
| 3R | 32079331 | 3R | 19618796..19619024 | 334..106 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 19619085..19619185 | 106..6 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:17:30 has no hits.
UFO12434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:43 Download gff for
UFO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RB | 426..1452 | 1..1014 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:29 Download gff for
UFO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 718..1744 | 1..1014 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:32 Download gff for
UFO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 718..1744 | 1..1014 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:32 Download gff for
UFO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19617829..19618250 | 594..1005 | 93 | <- | Minus |
| 3R | 19618475..19618733 | 335..593 | 100 | <- | Minus |
| 3R | 19618796..19619023 | 107..334 | 100 | <- | Minus |
| 3R | 19619085..19619188 | 1..106 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:29 Download gff for
UFO12434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15443551..15443972 | 594..1005 | 93 | <- | Minus |
| arm_3R | 15444197..15444455 | 335..593 | 100 | <- | Minus |
| arm_3R | 15444518..15444745 | 107..334 | 100 | <- | Minus |
| arm_3R | 15444807..15444910 | 1..106 | 97 | | Minus |
