UFO12436.5prime Sequence
477 bp (398 high quality bases) assembled on 2012-10-19
> UFO12436.5prime
AGTCGACATGACACCCGGGCCAAAAACAGAAGAGCCCGGTGCCGGTAAAT
TGGCAGCCGAAATAGCCAACTATGTCACCTCATGGATGGGCAGCGATGGA
GCAGAGAATTTGCAAAAGTTTTCTCAGCTGCACTGGGACAACGAGTCGCA
GTTGAGGACTCAGGAACAGGAGTTTGAAAAGTACTACTTCATAGCCATGA
AACACTTGGCCAAAGGACGCGACTTGCATGCTGCTGCCCTTAAAGTTTCT
GTCCTAAGTGAAAGCGCCAATAATCTAAAGTCCGCCCTGGATCAATTCGC
CCAGAAACTGGAGCTGGCCCACGAACGCTATGATGCTGCCGGGCGTCTGC
TGCACTTGCTCACCCAGCATCGCGGGAAAACGCCGCCAGGGAGGAACTGC
AGCGTTTGGCTGACCACTGGGCGCCACCTCCCTGCTGAAAAACACTGGCC
GGTGATGCGGAAAACCATACGTTGCCA
UFO12436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33275-RC | 3253 | CG33275-RC | 98..572 | 7..477 | 2200 | 98.1 | Plus |
| CG33275-RD | 6257 | CG33275-RD | 3169..3576 | 74..477 | 1865 | 97.8 | Plus |
| CG33275-RB | 5584 | CG33275-RB | 2496..2903 | 74..477 | 1865 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7635873..7636155 | 199..477 | 1140 | 96.8 | Plus |
| 3L | 28110227 | 3L | 7635681..7635806 | 74..199 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 7633546..7633614 | 7..75 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:17:36 has no hits.
UFO12436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:44 Download gff for
UFO12436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 64..542 | 1..476 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:32 Download gff for
UFO12436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 93..571 | 1..476 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:35 Download gff for
UFO12436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 93..571 | 1..476 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:35 Download gff for
UFO12436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7633541..7633612 | 1..73 | 95 | -> | Plus |
| 3L | 7635681..7635806 | 74..199 | 100 | -> | Plus |
| 3L | 7635874..7636154 | 200..476 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:32 Download gff for
UFO12436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7626641..7626712 | 1..73 | 95 | -> | Plus |
| arm_3L | 7628781..7628906 | 74..199 | 100 | -> | Plus |
| arm_3L | 7628974..7629254 | 200..476 | 96 | | Plus |
