UFO12449.5prime Sequence
1059 bp (962 high quality bases) assembled on 2012-10-19
> UFO12449.5prime
AGTCGACATGGACATGCAAGTGCAGCGCCCCATTACGTCAGGCAGCCGGC
AGGCCCCGGATCCGTATGATCAGTATCTGGAGAGCCGTGGACTCTACCGT
AAGCACACGGCCCGGGACGCCTCCAGTTTGTTCCGTGTGATCGCCGAGCA
GATGTACGACACCCAGATGCTGCACTACGAGATTCGGCTAGAGTGCGTCC
GCTTCATGACCCTAAAACGACGCATCTTTGAGAAGGAAATTCCTGGCGAT
TTCGATAGCTACATGCAGGACATGTCCAAGCCCAAGACATATGGAACCAT
GACAGAACTACGCGCTATGTCCTGCCTATATCGCCGCAATGTTATCCTGT
ATGAGCCCTACAACATGGGCACCAGCGTCGTTTTTAATCGTCGCTATGCG
GAAAACTTCCGTGTCTTCTTCAACAATGAGAATCACTTTGATTCGGTTTA
TGACGTTGAATATATAGAAAGAGCCGCCATTTGTCAATCAATCGCCTTTA
AGTTGCTGTACCAGAAGCTTTTCAAATTGCCTGACGTATCCTTTGCTGTG
GAGATTATGTTGCATCCACACACCTTCAATTGGGATCGCTTCAATGTGGA
GTTCGATGACAAGGGCTATATGGTTCGCATTCATTGCACCGATGGACGAG
TTTTTAAGCTTGATCTGCCAGGGGACACAAACTGCATACTGGAAAACTAT
AAGCTGTGCAATTTCCATAGCACCAATGGAAATCAGAGCATTAATGCTCG
AAAGGGAGGCCGGCTGGAGATTAAAAACCAGGAGGAGCGAAAGGCATCCG
GCAGCAGTGGCCACGAACCAAACGATCTGTTGCCATGTGTCCAAAACCGA
TTGGAGTCCTGTGTCCGCCAGCTGCTAGATGATGGTATCTCTCCGTTTCC
CTACAAGTGCCCAAGTCCATGGACCCTATATGTATCGTATATAGAATTTT
GATTGCTGGAACGATATCCGCCAGAGCCAGCTTTATATGTCTACATAATG
ACTATAACTTTAGTCCCGTATGAATTCCGTCATTCCCTGCCGCCAGAATG
AGTACCGGC
UFO12449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otu-RE | 3118 | CG12743-RE | 180..1244 | 1..1057 | 4865 | 97.8 | Plus |
| otu-RD | 3006 | CG12743-RD | 68..1132 | 1..1057 | 4865 | 97.8 | Plus |
| otu-RA | 3101 | CG12743-RA | 163..1227 | 1..1057 | 4865 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8487765..8488162 | 886..489 | 1895 | 99.5 | Minus |
| X | 23542271 | X | 8488603..8488838 | 236..1 | 1165 | 99.6 | Minus |
| X | 23542271 | X | 8488220..8488375 | 488..333 | 780 | 100 | Minus |
| X | 23542271 | X | 8488444..8488543 | 333..234 | 500 | 100 | Minus |
| X | 23542271 | X | 8487625..8487714 | 971..884 | 225 | 93.4 | Minus |
| 2L | 23513712 | 2L | 4690352..4690441 | 203..114 | 195 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:19 has no hits.
UFO12449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:55 Download gff for
UFO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RC | 162..1182 | 1..1012 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:00 Download gff for
UFO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RA | 163..1228 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:02 Download gff for
UFO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otu-RA | 163..1228 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:02 Download gff for
UFO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8487767..8488162 | 489..884 | 99 | <- | Minus |
| X | 8488220..8488374 | 334..488 | 100 | <- | Minus |
| X | 8488444..8488541 | 236..333 | 100 | <- | Minus |
| X | 8488604..8488838 | 1..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:00 Download gff for
UFO12449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8381800..8382195 | 489..884 | 99 | <- | Minus |
| arm_X | 8382253..8382407 | 334..488 | 100 | <- | Minus |
| arm_X | 8382477..8382574 | 236..333 | 100 | <- | Minus |
| arm_X | 8382637..8382871 | 1..235 | 99 | | Minus |
